Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq473 392 7e-107 seq12140 279 1e-72 seq2036 246 6e-63 seq2158 120 6e-25 seq2475 77.0 7e-12 >seq473 Length=1908 Score = 392 bits (434), Expect = 7e-107 Identities = 270/301 (90%), Gaps = 3/301 (1%) Strand=Plus/Plus Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 60 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 |||||||||||||||||||||||||||||| | |||| ||||| |||| |||| | Sbjct 61 TATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGATCTTCGCTTGCGCTAAACCCT 120 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 || ||||||||||||||||||||||||||||| | |||||||||| |||| ||| ||||| Sbjct 121 CCTCTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTTACGATTTAGC 180 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT-AGA 303 ||| | ||||||||||| |||||||| |||||||||||||| |||||| ||| | | || Sbjct 181 AGAGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCCTATTCACTGCGG-CTGACCTAAGT 239 Query 304 CAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCT 363 || |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct 240 CA-GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACGAGAGTTCT 298 Query 364 C 364 | Sbjct 299 C 299 >seq12140 Length=4113 Score = 279 bits (308), Expect = 1e-72 Identities = 208/241 (86%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 ||||||| || | | | ||||||| |||||| || |||||||||||| || ||||| Sbjct 3367 GCATCTTTACTCGTACTGCAATTTCGCCGAGTTCATGGTTGAGACAGTGGGGAAGTCGTT 3308 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3307 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 3248 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGA-TTGC-TCTAACAGAT 184 ||||||| ||||||||||||||||||||| ||| | ||||||| |||| ||| |||| | Sbjct 3247 TAGTTACCACCGCCGTTTACTGGGGCTTAAATTCTCCGCTTCGACTTGCGTCTGACAGGT 3188 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 || |||||||||||||||||||||||| ||||| | |||||||||||||||||||| || Sbjct 3187 CCTCTTAACCTTCCAGCACCGGGCAGGAGTCAGTCCGTATACATCGTCTTGCGACTTCGC 3128 Query 245 A 245 | Sbjct 3127 A 3127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 49/54 (91%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 311 CCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||| ||||||||||| ||||||||||||||||||||| || ||||| Sbjct 3035 CCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCATGATTCTC 2982 >seq2036 Length=1179 Score = 246 bits (272), Expect = 6e-63 Identities = 156/169 (92%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | || ||||||||||||||| | ||||||||||||||||| Sbjct 1011 TAACCTGCATCTTCACAGGTACTAAAATTTCACCGAGTCTCTCGTTGAGACAGTGCCCAA 1070 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1071 ATCATTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 1130 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCG 169 |||||||||||||||||||||||||||||||||| | |||| |||||| Sbjct 1131 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTCAATTCAGAGCTTCG 1179 >seq2158 Length=1154 Score = 120 bits (132), Expect = 6e-25 Identities = 116/147 (79%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 208 CAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAAC 267 |||| ||||| |||||||| |||| ||| || ||| | ||||| |||||| ||||| Sbjct 1 CAGGTGTCAGGCTGTATACATCATCTTTCGAGTTTGCACAGCCCTGTATTTTTGTTAAAC 60 Query 268 AGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAG--GCACCCCTTCTCCCTAAGT 325 ||| || |||||||||||||||| |||| | ||| | | ||||||| |||| |||| Sbjct 61 AGTTGCCTGGGCCTATTCTCTGC-GCCTCCCCCGGACTGGAGGACCCCTTATCCCGAAGT 119 Query 326 TACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||| |||||| | ||||||| Sbjct 120 TACGGGGTCAGTTTGCCTAATTCCTTA 146 >seq2475 Length=1094 Score = 77.0 bits (84), Expect = 7e-12 Identities = 50/55 (91%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 310 CCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| ||||||||||| ||||||||||||||||||||| || ||||| Sbjct 1094 CCCCTTCTCCCGAAGTTACGGGGGCATTTTGCCGAGTTCCTTAACCATGATTCTC 1040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062262791040