Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2364 657 0.0 seq12140 405 2e-110 seq3336 205 3e-50 seq980 125 2e-26 >seq2364 Length=1112 Score = 657 bits (728), Expect = 0.0 Identities = 445/498 (89%), Gaps = 7/498 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1008 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 949 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 948 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAGTCTTGACATCCNNNNNNNNNNN 889 Query 121 TAGAGATAGA--GGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTC 178 |||||| || ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 888 CAGAGATGGATTGGTG---CCTTCGGGA-ACTCAGAGACAGGTGGTGCATGGTTGTCGTC 833 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTT 238 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 832 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTATGCTTAGTT 773 Query 239 GCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || ||||||||||||||||||||| |||||||||| | ||||||||||||||||||| Sbjct 772 GCTATCATTAAGTTGGGCACTCTAGCGAGACTGCCGGTAATAAACCGGAGGAAGGTGGGG 713 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 712 ATGACGTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGG-CAAT 654 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||| Sbjct 653 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCAAAAAGCCGGTCTCAGTTCGGAT 594 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCT 478 ||||| |||||||||| ||| |||||| ||||||||||||||||| |||||||| || Sbjct 593 TGTAGGCTGCAACTCGCCTACATGAAGTCGGAATCGCTAGTAATCGCGGATCAGCACGCC 534 Query 479 ACGGTGAATACGTTCCCG 496 ||||||||||||||||| Sbjct 533 GCGGTGAATACGTTCCCG 516 >seq12140 Length=4113 Score = 405 bits (448), Expect = 2e-110 Identities = 382/499 (77%), Gaps = 6/499 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | |||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 189 TACGGCCGCAAGGCTAAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCAT 248 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 | || ||||||||| |||||||||||||||||||||| ||||||| | Sbjct 249 GCGGATTAATTCGATGCAACGCGAAGAACCTTACCAAGGCTTGACA---TGNNNNNNNNN 305 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 ||||||| ||||||||||||||||| Sbjct 306 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGGTGGTGCATGGTTGTCGTCAG 365 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 366 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTTCCATGTTGC 425 Query 241 CATCA--TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGG 298 || || | | | |||| |||| | ||||||||| | ||| ||||||||||||||| Sbjct 426 CAGCACGTGATGGTGGGGACTCATGGGAGACTGCCGGGGTCAACTCGGAGGAAGGTGGGG 485 Query 299 ACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAAT 358 | |||||||||||||||||||||||||| ||||||| ||| | ||||||||||| | | Sbjct 486 ATGACGTCAAATCATCATGCCCCTTATGTCTTGGGCTTCACGCATGCTACAATGGCCGGT 545 Query 359 ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGAT 418 |||||||| |||| | | || ||| |||||| ||||| | ||||||||||||| Sbjct 546 ACAAAGGGTTGCGATGCTGTGACCCGGAGCGAATCCCTTAAAGCCGGTCTCAGTTCGGAT 605 Query 419 TGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGC 477 ||||||||||||||||||| ||||| ||| ||||||||||||| |||||||| | || Sbjct 606 CGTAGTCTGCAACTCGACTACGTGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGC 665 Query 478 TACGGTGAATACGTTCCCG 496 | ||||||||||||||||| Sbjct 666 TGCGGTGAATACGTTCCCG 684 >seq3336 Length=967 Score = 205 bits (226), Expect = 3e-50 Identities = 160/189 (85%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 783 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 842 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG-ACCCCT 119 |||||||||||||||||||||||||||||||||||| |||||||||| || | || Sbjct 843 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACATCGAGTGCATAGCT 902 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 |||||| | |||| |||||| |||||||| |||||||||||||||| Sbjct 903 -AAGAGAT-TANNNNNNNNCTTC--GGGACACTTAGACAGGTGGTGCATGGTTGTCGTCA 958 Query 180 GCTCGTGTC 188 ||||||||| Sbjct 959 GCTCGTGTC 967 >seq980 Length=1537 Score = 125 bits (138), Expect = 2e-26 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 286 GAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGC 345 |||||||||||||| |||||||| |||||||| |||||| || ||||||||||||||| Sbjct 1537 GAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTTACGACCAGGGCTACACACGTGC 1478 Query 346 TACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGT 405 |||||||| || | |||| | Sbjct 1477 TACAATGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCGAAAAGCCGG 1418 Query 406 -TCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG 464 ||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 1417 GTCTCAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGCTGGAATCGCTAGTAATCG 1358 Query 465 TAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||| |||| ||||||||||||||||| Sbjct 1357 CGCATCAGCCATGGCGCGGTGAATACGTTCCCG 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503805758400