Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10431 205 1e-50 seq5808 73.4 6e-11 >seq10431 Length=139373 Score = 205 bits (226), Expect = 1e-50 Identities = 195/243 (80%), Gaps = 5/243 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || ||| Sbjct 92701 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC-TCA 92759 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG-TCG 135 | || | |||| | || | ||||||||||||| || | | || | || Sbjct 92760 ATCT-CGTGCGGCTAAACACCGCTTATCCCTCTAAGAAGT-AGACTGGACTCAAAAATCC 92817 Query 136 ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACT 195 | | |||||||||||| || |||||| ||||||||||||| ||||||||||||| || Sbjct 92818 A-GCCACTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCT 92876 Query 196 CCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCT 255 |||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||| Sbjct 92877 CCACCAACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCT 92936 Query 256 GTC 258 ||| Sbjct 92937 GTC 92939 Score = 158 bits (174), Expect = 2e-36 Identities = 105/117 (90%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||| ||||||||||||| ||||||||||||| |||||||| Sbjct 95285 CTATTTAGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCGCTCCACCA 95344 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||| |||||||||| |||||||||| Sbjct 95345 ACTAAGAACGGCCATGCACCACCAACCACCAAATCGAGAAAGAGCTTTCAATCTGTC 95401 Score = 80.6 bits (88), Expect = 4e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||||||||||||| |||| | |||||||||||||||||||||||||||| | |||| Sbjct 63368 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCG-CTCA 63310 Query 77 AACT 80 | || Sbjct 63309 ATCT 63306 >seq5808 Length=57035 Score = 73.4 bits (80), Expect = 6e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCA 229 |||| ||||||||||||| ||||| |||||||||| ||||||||||| ||| ||| Sbjct 10417 GAATAAACCAGACAAATCGCTCCATCAACTAAGAAAGGCCATGCACCGCCAACCA 10471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796700309115