Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq10431 363 3e-98 seq4929 288 2e-75 seq4107 136 7e-30 seq12140 78.8 2e-12 >seq10431 Length=139373 Score = 363 bits (402), Expect = 3e-98 Identities = 261/296 (88%), Gaps = 5/296 (2%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 89895 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 89836 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 89835 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 89776 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89775 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 89716 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 89715 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 89656 Query 240 TCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || ||| | |||||||||||||||||| ||||| ||| |||| || Sbjct 89655 AGAAACTATC--TGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTC 89602 Score = 361 bits (400), Expect = 9e-98 Identities = 242/266 (91%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 90253 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 90312 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| Sbjct 90313 ATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCG 90372 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 90373 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 90432 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGACT-AAAGGATCGAT 267 |||||||||||||||||| ||||||| || ||| | || ||| | ||||||||||| Sbjct 90433 CCTGTGGTAACTTTTCTGACACCTCTTACCAGAAACTATC--TGGATTAAAAGGATCGAT 90490 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 ||||||| ||||| ||| |||| || Sbjct 90491 AGGCCACGCTTTCGCGGTCTGTACTC 90516 Score = 351 bits (388), Expect = 2e-94 Identities = 261/298 (88%), Gaps = 7/298 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 97842 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 97901 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 97902 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 97961 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97962 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 98021 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG-TAAC-TTTTCTGGCACCTCTAG 237 || |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| Sbjct 98022 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTTAACTTTTTCTGACACCTCTTA 98081 Query 238 CCTCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || ||| | || ||| | |||||||||||||||||| ||||| ||| |||| || Sbjct 98082 CCAGAAACTATC--TGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTC 98137 >seq4929 Length=60846 Score = 288 bits (318), Expect = 2e-75 Identities = 199/224 (89%), Gaps = 1/224 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGA-CGGTCATCAGTAGGGTAAAACTAACCTGTCTC 59 ||| |||| | ||||| || | | | | |||| ||||||||||||| ||||||||| | Sbjct 31847 TACCAAGCAGGATTACTATCGCAACAATCAGTCAACAGTAGGGTAAAATTAACCTGTCCC 31906 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || Sbjct 31907 ACGACGGTCTAAACCTAGCCCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 31966 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 31967 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAACCAACGTCGCTA 32026 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || |||||||||||||||||||||| ||||||||||||| |||| Sbjct 32027 TGGACGCTTGGCTGCCACAAGCCAGCTATCCCTGTGGTATCTTT 32070 >seq4107 Length=861 Score = 136 bits (150), Expect = 7e-30 Identities = 78/80 (98%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 10 TCATCAGTAGGGTAAAACTAACCCGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 69 Query 91 TTAGTGGGTGAACAATCCAA 110 |||||||||||||||||||| Sbjct 70 TTAGTGGGTGAACAATCCAA 89 >seq12140 Length=4113 Score = 78.8 bits (86), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 3934 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACC 3875 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 3874 CTTGGGACCAACTCCAGCCCCAGGATGC---GACGAGCCGACATCGAGGTGCCAAACCAT 3818 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||| || ||||| || | | |||| |||||||| | |||| ||||| Sbjct 3817 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 3763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854289654240