Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2036 295 1e-77 seq12140 201 2e-49 >seq2036 Length=1179 Score = 295 bits (326), Expect = 1e-77 Identities = 202/228 (89%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 112 GGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCG 171 |||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 830 GGACAGTGTCTGACGGGCAGTTTGACTGGGGCGGTCGCCTCCTAAAGAGTAACGGAGGCG 771 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGT 231 ||||||| | ||||||| |||| |||||| ||| |||| |||||||||||| ||||| | Sbjct 770 CCCAAAGGTTCCCTCAGATTGGTTGGAAATCATTCGCAGAGTGCAAAGGCAGAAGGGAGC 711 Query 232 TTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTG 291 |||||||||| | | ||| || ||||||||||||||||||||||| |||||||| ||| Sbjct 710 TTGACTGCGAGAGCTACAACTCGAGCAGGGACGAAAGTCGGGCTTAGTGATCCGGTGGTA 651 Query 292 CTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | |||||||| |||| |||||| ||||||||||||||||||||||||| Sbjct 650 CCGAATGGAAGGGCCATCGCTCAACGGATAAAAGCTACCCTGGGGATA 603 >seq12140 Length=4113 Score = 201 bits (222), Expect = 2e-49 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | | ||| ||||| ||||||||||| |||||| |||||||||||||||| Sbjct 3553 GGGACAGTGCCTGATGGGTAGTTTAACTGGGGCGGTTGCCTCCTAAAGAGTAACGGAGGC 3612 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 |||||||| | |||||||| ||| ||| || || | | ||||||| ||| ||||| | Sbjct 3613 GCCCAAAGGTTCCCTCAGCCTGGTTGGCAATCAGGTGTTGAGTGCAAGTGCACAAGGGAG 3672 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 ||||||| || || | ||| |||||||||||||||||| || |||||||| ||| Sbjct 3673 CTTGACTGTGAGACTGACGGGTCGAGCAGGGACGAAAGTCGGAGATAGTGATCCGGTGGT 3732 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | |||||| ||| |||||| ||||||||||| |||| ||||||| Sbjct 3733 GGCGTATGGAAGCGCCATCGCTCAACGGATAAAAGGTACCTCGGGGATA 3781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982273123040