Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq2036 156 5e-36 seq12140 134 2e-29 seq473 98.7 1e-18 >seq2036 Length=1179 Score = 156 bits (172), Expect = 5e-36 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| ||||| |||||||||| | |||||||||| | ||||| |||||||| || Sbjct 987 GGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCGA 1046 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | ||| || ||||||||| ||| || ||||||| ||||||||||||||| Sbjct 1047 GTCTCTCG-TTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCC 1105 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1106 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 1165 >seq12140 Length=4113 Score = 134 bits (148), Expect = 2e-29 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| ||||| ||| |||| ||||||| || |||| ||||||| | | Sbjct 3398 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTACTGCAATTTCGCCG 3339 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || ||| ||||||||||| ||| |||||||||||||||||||||||||| Sbjct 3338 AGTTCATGGTTGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 3279 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 3278 GACAAGGAATTTCGCTACCTTAGGATGGTTA 3248 >seq473 Length=1908 Score = 98.7 bits (108), Expect = 1e-18 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 61 Query 173 ANNNNNNNNNNNNNNGTTTACTGGGGCTTC 202 | ||||||||||||||| Sbjct 62 ATAGTTACGGCCGCCGTTTACTGGGGCTTC 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547131537585