Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3336 242 8e-62 seq5051 241 3e-61 seq696 120 7e-25 >seq3336 Length=967 Score = 242 bits (268), Expect = 8e-62 Identities = 262/340 (77%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||| |||||| |||||||| ||| |||||||| | | ||| |||||| || | ||| Sbjct 335 CTTTACA-TCCGAAAACCTTCTT-CACTCACGCGGCGTCG-CTGCATCAGGGTTGCCCCC 279 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 278 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAA 219 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||| |||||||| || | ||| |||||||||||||||| ||| ||||| | Sbjct 218 TGTGGCCGTTCACCCTCTCAGGCCGGCTACTGATCGTCGCCTTGGTGGGCCGTTACCCCT 159 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGT-----CCCC 235 |||||||||||||| ||| || ||||| ||| | ||| || | | || Sbjct 158 CCAACTAGCTAATCAGACGCGGGTCCATCTCATACC------ACCGGAGTTTTTCACACC 105 Query 236 TG--CTTTC-TCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCC 292 | | | | ||| | | |||||||||||||| ||||||| | |||||||||| Sbjct 104 GGGCCATGCAGCCCTGTGCGCTTATGCGGTATTAGCTATCGTTTCCAATAGTTATCCCCC 45 Query 293 ACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGC 331 ||| ||| || || |||| || |||||||||||| ||| Sbjct 44 GCTATGAGGTAGGTTACCTACGCGTTACTCACCCGTTCGC 5 >seq5051 Length=722 Score = 241 bits (266), Expect = 3e-61 Identities = 173/197 (88%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||| |||||| ||||| | ||| |||||||| | | ||| |||||||||||||||| Sbjct 290 TTTACATCCCGAAGTCCTTCAT-CACTCACGCGGCGTCG-CTGCATCAGGCTTTCGCCCA 347 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 348 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 407 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | ||||| |||||||| | | || | ||||||||||||||||||| ||||||||| Sbjct 408 GTGGCCGATCACCCTCTCAGGTCGGCTATGTATCGTCGCCTTGGTGAGCCTTTACCTCAC 467 Query 182 CAACTAGCTAATCCGAC 198 ||||||||||||| ||| Sbjct 468 CAACTAGCTAATCAGAC 484 >seq696 Length=1733 Score = 120 bits (132), Expect = 7e-25 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 98 TCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGT 157 ||||| |||||||||||| |||||||| | ||||| |||||||| | | || | ||||| Sbjct 1 TCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTATGCATCGT 60 Query 158 CGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 |||||||||||||| ||||||||||||||||||||| Sbjct 61 CGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAAT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071861551200