Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq12140 614 2e-173 seq1286 356 8e-96 seq473 333 1e-88 seq2971 315 3e-83 seq980 208 3e-51 seq5684 156 2e-35 seq2475 125 3e-26 seq2158 86.0 2e-14 seq3737 78.8 3e-12 >seq12140 Length=4113 Score = 614 bits (680), Expect = 2e-173 Identities = 429/491 (87%), Gaps = 15/491 (3%) Strand=Plus/Minus Query 109 GCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 168 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 2098 GCTCTACCTCTGGCAAGAAACACACGACGCTGCACCTAAATGCATTTCGGGGAGAACCAG 2039 Query 169 CTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAA 228 ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||| Sbjct 2038 CTATCACGAAGTTTGATTGGCCTTTCACCCCTACCCACAGCTCATCCCCTCCATTTTCAA 1979 Query 229 CCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGA 288 | |||||||||||| |||||||||| ||| |||||||||| |||||| |||| Sbjct 1978 CTGAAGTGGGTTCGGGCCTCCACGCGCTCTNNNNNNNNCTTCAACCTGGCCATGGGTAGA 1919 Query 289 TCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCT 348 |||||||||||||||||| |||| |||||||| ||||||| ||| |||||||||||||| Sbjct 1918 TCACTTCGCTTCGGGTCTAGATCACGCCACTCA-ACGCCCTCTTCAGACTCGCTTTCGCT 1860 Query 349 ACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||| |||||||||||||||||||||||||||| || | ||||||||||||||||||||| Sbjct 1859 ACGACTACCCCACACGGGTTAACCTCGCGACATGACACTAACTCGCAGGCTCATTCTTCA 1800 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 |||||||||||||||| || ||||| |||||||||| ||||||||||| Sbjct 1799 AAAGGCACGCCGTCAC------CCCAAAAG--------GCTCCGACGGCTTGTAGGCACA 1754 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 ||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 1753 CGGTTTCAGGAACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTAC 1694 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | ||||||||||||||| || | |||||| ||||||| | |||||||| | ||||||||| Sbjct 1693 TGGTCCGCTATCGGTCATCAGGTAGTATTCAGGCTTACCAGGTGGTCCTGGCAGATTCAC 1634 Query 589 ACGAAATTTCA 599 ||||| ||||| Sbjct 1633 ACGAAGTTTCA 1623 >seq1286 Length=1409 Score = 356 bits (394), Expect = 8e-96 Identities = 418/553 (76%), Gaps = 19/553 (3%) Strand=Plus/Plus Query 51 CCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATCCAGTG 109 |||| ||||| |||||| | | |||||| | | | |||||| | | | ||||| Sbjct 857 CCGGTATTCGCAGTTTGCATCGGGTTGGTAAGTCGGGATGACCCCCTTGCCGAAACAGTG 916 Query 110 CTCTACCTCCGG-GAAGAA-ACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCA 167 ||||||| |||| || ||| |||| | |||| |||||||| ||||||||||||||| Sbjct 917 CTCTACCCCCGGAGATGAATTCACGAGGCGCT--ACCTAAATAGCTTTCGGGGAGAACCA 974 Query 168 GCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCA 227 |||||| | ||||||||||||||||||||| | ||||| ||||||| || | |||||| Sbjct 975 GCTATCTCCCGGTTTGATTGGCCTTTCACCCCCAGCCACAAGTCATCCGCTAATTTTTCA 1034 Query 228 ACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAG 287 || | ||| |||||||||||||| || |||||| ||||||||||||||||| ||| Sbjct 1035 ACATTAGTCGGTTCGGTCCTCCAGTTAGTGTTACCCAACCTTCAACCTGCCCATGGCTAG 1094 Query 288 ATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGC 347 ||||| | ||||||||| | | ||| ||| | |||||| || |||||| |||| | Sbjct 1095 ATCACCGGGTTTCGGGTCTATACCCTGCAACTTA-ACGCCCAGTTAAGACTCGGTTTCCC 1153 Query 348 TACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTC 407 | ||||| ||| | | ||||||||| || ||| || || |||| | | |||| | | Sbjct 1154 TTCGGCTCCCCTATTC-GGTTAACCTTGCTACAGAA-TATAAGTCGCTGACCCATTATAC 1211 Query 408 AAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCAC 467 |||||| |||| ||||| | ||||| || ||||| || | ||||| | || Sbjct 1212 AAAAGGTACGCAGTCACACG---CCTAA---GC----GTGCTCCCACTGCTTGTACGTAC 1261 Query 468 ATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGT 526 | |||||||||| || ||||||||||| | | ||||| |||||||||||||||||||||| Sbjct 1262 ACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTGCTTTTCACCTTTCCCTCACGGT 1321 Query 527 ACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTC 586 ||| || | ||||||||||| | ||||||||||| || | |||||| |||||||| Sbjct 1322 ACTGGTTCACTATCGGTCACTAGAGAGTATTTAGGGTTGGGAGATGGTCCTCCCAGATTC 1381 Query 587 ACACGAAATTTCA 599 |||| |||||| Sbjct 1382 CAACGAGATTTCA 1394 >seq473 Length=1908 Score = 333 bits (368), Expect = 1e-88 Identities = 353/463 (76%), Gaps = 17/463 (4%) Strand=Plus/Plus Query 105 CAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAA 164 ||||||||||||||| || | ||| |||||| |||||| ||||||| ||||| Sbjct 1015 CAGTGCTCTACCTCCAATAATCATCACTTGACGCTAGCCCTAAAGCTATTTCGGAGAGAA 1074 Query 165 CCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTT 224 ||||||||| | ||||| | |||| |||| || ||| ||||| ||||||| || ||| Sbjct 1075 CCAGCTATCTCCAAGTTCGTTTGGAATTTCTCCGCTACCCACAAGTCATCCAAGCACTTT 1134 Query 225 TCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGA 284 ||||| | |||||||||||||| || ||||| ||||||||||| ||||| Sbjct 1135 TCAACGTGCCCTGGTTCGGTCCTCCAGTGAGTTTTACCTCACCTTCAACCTGCTCATGGG 1194 Query 285 TAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTT 344 ||| |||| | | ||||||||| | | | ||| |||||| |||| |||| ||||| Sbjct 1195 TAGGTCACATGGTTTCGGGTCTAATACATCCAACTTG-ACGCCCCATTCAGACTTGCTTT 1253 Query 345 CGCTACGGCTACCCCACACGGG---TTAACCTCGCGACACAACGCAAACTCGCAGGCTCA 401 |||| ||||| | ||| | |||||||||| || | || || ||||| || ||| Sbjct 1254 CGCTTCGGCTCCGTTACATAGTAACTTAACCTCGCATCATATCGTAA-CTCGCCGGTTCA 1312 Query 402 TTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGT 461 |||| ||||||||||||| ||||| | | || || |||| ||||| |||| Sbjct 1313 TTCTACAAAAGGCACGCCATCACC-----CATTAACGG-------GCTCTGACGGCTTGT 1360 Query 462 AGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTC 521 ||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 1361 AGGCACACGGTTTCAGGTACTATTTCACTCCCCTCCCGGGGTGCTTTTCACCTTTCCCTC 1420 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 |||||||| ||||||||||||||| || | |||||| |||||| Sbjct 1421 ACGGTACTGGTCCGCTATCGGTCATCAGGTAGTATTCAGGCTT 1463 >seq2971 Length=1016 Score = 315 bits (348), Expect = 3e-83 Identities = 385/527 (73%), Gaps = 13/527 (2%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTC 112 ||||||||||||||| | |||||||||||| ||||||||| || |||||||| Sbjct 516 GGCATTCGGAGTTTGATATTCTTCGGTAAGCTTTGACGCCCCCTAGGAAATTCAGTGCTC 457 Query 113 TACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT 172 ||||||| ||| | || ||| ||| |||||| |||||| |||||||||||||| Sbjct 456 TACCTCCATGAATCTATAC-CGAGGCTAGCCCTAAAGCTATTTCGAGGAGAACCAGCTAT 398 Query 173 CACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTA 232 | | ||| |||||| |||| |||||||||||| ||||| || | |||||||| | Sbjct 397 CTCCGGGTTCGATTGGAATTTCTCCCCTATCCACACCTCATCGCCACCCTTTTCAACGGA 338 Query 233 AGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC 292 ||| |||||||||||||| |||||| ||||||||||| ||| || |||||||| Sbjct 337 TGTGCGTTCGGTCCTCCACTACCTCTTACGGCAGCTTCAACCTGACCAAGGGTAGATCAC 278 Query 293 TTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGG 352 | | ||||||||| | ||| | ||||||||||| |||||||||||||||||| Sbjct 277 CTGGTTTCGGGTCTACGACCAAATACT-AAACGCCCTATTCAGACTCGCTTTCGCTACGG 219 Query 353 CTACCCCA--CACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAA 410 || || || || | ||||||| || || | || ||||||| || ||||||| |||| Sbjct 218 CT-CCACATTTACTGCTTAACCTTGCATCAAATCG-TAACTCGCCGGTTCATTCTACAAA 161 Query 411 AGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATG 470 | | ||| | || | ||||| ||||| | Sbjct 160 ANNNNNNNNNNNNNNNNNNNNNNNNNNNG------TGCTTCCACAGCTTGTAAGCACACG 107 Query 471 GTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 ||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||| | Sbjct 106 GTTTCAGGTTCTATTTCACTCCCCTCCCGGGGTGCTTTTCACCTTTCCCTCACGGTAC-T 48 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 || | ||||||||||| | |||||||||| |||| |||||||||| Sbjct 47 GTTCACTATCGGTCACTAGAGAGTATTTAGCCTTAGAGGGTGGTCCC 1 >seq980 Length=1537 Score = 208 bits (230), Expect = 3e-51 Identities = 162/189 (86%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 153 TTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCA 212 |||||| |||||| ||||||| | |||||||||||||||||||||||| || ||| || Sbjct 1 TTTCGGAGAGAACAAGCTATCGCCCAGTTTGATTGGCCTTTCACCCCTACCCGCAGCTCG 60 Query 213 TCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA-CGCGGTCTTACCCGCGCTTCA 271 ||| || |||||||| ||||||||||||||||||| ||| |||||| ||||||||| Sbjct 61 TCCGAACACTTTTCAACTGAAGTGGGTTCGGTCCTCCAGCGC-CTCTTACACGCGCTTCA 119 Query 272 ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTAT 331 ||||| |||||| |||||||||||||||||||||| |||| |||||||| ||||||| | Sbjct 120 ACCTGGCCATGGGTAGATCACTTCGCTTCGGGTCTAGATCACGCCACTCA-ACGCCCTCT 178 Query 332 TCGGACTCG 340 || |||||| Sbjct 179 TCAGACTCG 187 >seq5684 Length=642 Score = 156 bits (172), Expect = 2e-35 Identities = 177/234 (76%), Gaps = 14/234 (6%) Strand=Plus/Minus Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 ||||||| || || | ||| ||||||| || | |||| ||||| | |||| ||| || Sbjct 640 TTAACCTTGC--CAGTATGCACAACTCGCCGGACCGTTCTACAAAAAGTACGCGGTC-CC 584 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | || |||| || | | || | ||||| |||| |||||||||| ||||| Sbjct 583 TCATAT---AAAG-------AGGTTCCACAGCTTGTAAACACAGGGTTTCAGGTTCTATT 534 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCA 545 ||||||||| || ||||| ||||||||||||||||||||||||| || | |||||||||| Sbjct 533 TCACTCCCCTCCCGGGGTCCTTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCA 474 Query 546 CCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | | |||||||||| |||| | |||||| |||||||| |||| |||||| Sbjct 473 CTAGAGAGTATTTAGCCTTAGGAGATGGTCCTCCCAGATTCCAACGAGATTTCA 420 >seq2475 Length=1094 Score = 125 bits (138), Expect = 3e-26 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 133 CGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTT 192 ||||||||| |||||| ||||||||| ||||||||||||| || || ||||| | ||| Sbjct 216 CGACGCTGCCCCTAAAGGCATTTCGGAGAGAACCAGCTATTACCCAGCTTGATAAGTCTT 157 Query 193 TCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACG 252 || | || | |||||| ||||||| |||||||| ||||| || ||||||| Sbjct 156 TCGCTCCCACCCACAGCTCATCCCAGACCTTTTCAACGGTCACGGGTTTGGGCCTCCACC 97 Query 253 CGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCAC-TTCGCTTCGGGTCTTGATC 311 | |||| | |||||| || | |||||| ||| || | | |||||||||| ||| Sbjct 96 TCCTGTTACGGGGGCTTCACCCGGTCCATGGGTAGCTCGCATGGGCTTCGGGTC-CAATC 38 Query 312 GTGC-CACTC-ATACGCCCTATTCGGACTCGCTTTCG 346 || |||| | |||||| |||||||||||||||| Sbjct 37 CGGCAGACTCAAGGCGCCCTGTTCGGACTCGCTTTCG 1 >seq2158 Length=1154 Score = 86.0 bits (94), Expect = 2e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 237 GGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCG 296 ||| ||| ||||||| || |||||| || |||||| ||||||||||| ||||||||| || Sbjct 1084 GGTGCGGGCCTCCACACGCTCTTACACGTGCTTCACCCTGCCCATGGCTAGATCACTCCG 1143 Query 297 CTTCGGGTCT 306 |||||||||| Sbjct 1144 CTTCGGGTCT 1153 >seq3737 Length=911 Score = 78.8 bits (86), Expect = 3e-12 Identities = 84/112 (75%), Gaps = 12/112 (11%) Strand=Plus/Plus Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 ||| ||||||||||||| ||||| | | || || |||| ||| ||||| Sbjct 812 TCTACAAAAGGCACGCCATCACC-----CATTAACGG-------GCTCTGACTACTTGTA 859 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCT 514 ||||| |||||||||| |||||||||||||| | ||||| |||||||||| Sbjct 860 AGCACACGGTTTCAGGTTCTATTTCACTCCCCTTCCGGGGTGCTTTTCACCT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817365256960