Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1286 408 1e-111 seq12140 246 8e-63 seq473 199 1e-48 seq2971 192 1e-46 seq5684 187 6e-45 seq3737 100 7e-19 seq980 87.8 4e-15 >seq1286 Length=1409 Score = 408 bits (452), Expect = 1e-111 Identities = 343/409 (84%), Gaps = 9/409 (2%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 1010 CCACAAGTCAT-CCGCTAA-TTTTTCAACATTAGTCGGTTCGGTCCTCCAGTTAGT-GTT 1066 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||||||| || |||||| || ||||| ||||||||| ||| || Sbjct 1067 ACCCAACCTT-CAACCTGCCCAT-GGCTAGATCACCGGGTTT-CGGGTCTATA-CCCTGC 1122 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 ||| |||||| ||||||||| ||| | || || ||||||||||||||||| ||| | Sbjct 1123 AACTTAACGCCCAGTTAAGACTCGGTTTCC-CTTCGGCTCCCCTATTCGGTTAACCTT-G 1180 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 | || ||| ||||||||||||||||||||||||||||||||||||||| | | ||| | Sbjct 1181 CTACAGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACGCCTAAGCGT 1240 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||||||||||||||||| | ||||||||||| ||| ||||||||||||| ||||||| | Sbjct 1241 GCTCCCACTGCTTGTACGTACACGGTTTCAGGTTCTTTTTCACTCCCCTCGCCGGGGTGC 1300 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| |||||||||||||||||| ||||||||||||||| | ||||||||| ||| Sbjct 1301 TTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCACTAGAGAGTATTTAGGGTTG 1360 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTAC 417 | |||||||| |||| |||| || | |||| |||| ||| | ||| Sbjct 1361 GGAGATGGTCCTCCCAGATTCCAACGAGATTTCACGTGTCCCGCCGTAC 1409 >seq12140 Length=4113 Score = 246 bits (272), Expect = 8e-63 Identities = 268/345 (78%), Gaps = 12/345 (3%) Strand=Plus/Minus Query 78 TTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACG 137 ||||||||| |||| || |||||| | | || |||||||| || | || ||| ||| Sbjct 1939 TTCAACCTGGCCATGGG-TAGATCACTTCGCTT-CGGGTCTAGATCAC-GCCACTCAACG 1883 Query 138 CCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGCCAC-TGAA 196 |||| | ||||||||||| ||||||| || ||| | ||| | | | | || || ||| Sbjct 1882 CCCTCTTCAGACTCGCTTT-CGCTACGACTACCCCACACGGGTTAACCTCGCGACATGAC 1824 Query 197 AATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCAC 256 | ||| |||| | | |||| | ||||||| |||| ||||||| | || |||||| || Sbjct 1823 ACTAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCCCAAAA----GGCTCCGAC 1768 Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 ||||||| ||| |||||||||||| |||||||||||||||| ||||||| |||||| || Sbjct 1767 GGCTTGTAGGCACACGGTTTCAGGAACTATTTCACTCCCCTC-CCGGGGTACTTTTCACC 1709 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCA-GTAGTATTTAGCCTTGGAGGATG 375 |||||||||||||||| || | |||||||||| ||| |||||||| || ||| | || Sbjct 1708 TTTCCCTCACGGTACTGGTCCGCTATCGGTCA-TCAGGTAGTATTCAGGCTTACCAGGTG 1650 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| || ||||| || ||||||| || ||||||| ||||||| Sbjct 1649 GTCCTGGCAGATTCACACGAAGTTTCACGGGCTCCGTGCTACTCG 1605 >seq473 Length=1908 Score = 199 bits (220), Expect = 1e-48 Identities = 251/330 (76%), Gaps = 20/330 (6%) Strand=Plus/Plus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 |||||||||||||||| ||| ||||| ||||| |||||||| ||| || ||| || | Sbjct 1147 GGTTCGGTCCTCCAGTGAGTT-TTACCTCACCTT-CAACCTGCTCATGGG-TAGGTCACA 1203 Query 105 CGGTTTTCGGGTCTATTTC--CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTA 162 ||||| |||||||| | | ||| ||| ||||||| | | ||||| ||||| |||| Sbjct 1204 TGGTTT-CGGGTCTAATACATCCA---ACTTGACGCCCCATTCAGACTTGCTTT-CGCTT 1258 Query 163 CGCCTCC----CCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATA 218 || |||| | || | |||| || || | | ||| |||| | |||| || Sbjct 1259 CGGCTCCGTTACATAGTAACTTAACCTC-GCATCATATCGTAACTCGCCGGTTCATTCTA 1317 Query 219 CAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCA 278 ||||||| |||| ||||||| || | ||||| || ||||||| ||| ||||||||| Sbjct 1318 CAAAAGGCACGCCATCACCCATTAACG--GGCTCTGACGGCTTGTAGGCACACGGTTTCA 1375 Query 279 GGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCA 338 || |||||||||||||||| ||||||| |||||| |||||||||||||||||| || | Sbjct 1376 GGTACTATTTCACTCCCCTC-CCGGGGTGCTTTTCACCTTTCCCTCACGGTACTGGTCCG 1434 Query 339 CTATCGGTCAGTCA-GTAGTATTTAGCCTT 367 |||||||||| ||| |||||||| || ||| Sbjct 1435 CTATCGGTCA-TCAGGTAGTATTCAGGCTT 1463 >seq2971 Length=1016 Score = 192 bits (212), Expect = 1e-46 Identities = 275/382 (72%), Gaps = 15/382 (4%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || ||||||| |||| ||| | | |||||||||| || ||||||||||||| | Sbjct 372 CCTATCCACACCTCAT--CGCCACCCTTTTCAACGGATGTGCGTTCGGTCCTCCACTACC 315 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||| | ||| ||||||| ||| ||| |||||| || ||||| |||||||| | Sbjct 314 TC-TTACGGCAGCTT-CAACCTGACCA-AGGGTAGATCACCTGGTTT-CGGGTCTACGAC 259 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATT-CGGTTAA 182 | | |||| |||||||| | ||||||||||| ||||||| |||| | || | | | | Sbjct 258 CAAAT-ACTAAACGCCCTATTCAGACTCGCTTT-CGCTACGGCTCCACATTTACTGCTTA 201 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 | |||| | | ||| |||| | |||| ||||||| Sbjct 200 ACCTTGCATCAAATCGTAACTCGCCGGTTCATTCTACAAAANNNNNNNNNNNNNNNNNNN 141 Query 243 AAGT----GGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTC 298 | ||| |||| ||||||| ||| ||||||||||| ||||||||||||||||| Sbjct 140 NNNNNNNNGTGCTTCCACAGCTTGTAAGCACACGGTTTCAGGTTCTATTTCACTCCCCTC 81 Query 299 TCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTA 358 ||||||| |||||| |||||||||||||||||| ||||||||||||||| | |||| Sbjct 80 -CCGGGGTGCTTTTCACCTTTCCCTCACGGTACT-GTTCACTATCGGTCACTAGAGAGTA 23 Query 359 TTTAGCCTTGGAGGATGGTCCC 380 ||||||||| |||| ||||||| Sbjct 22 TTTAGCCTTAGAGGGTGGTCCC 1 >seq5684 Length=642 Score = 187 bits (206), Expect = 6e-45 Identities = 176/221 (80%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 200 AAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA-ACAAAGTGGGCTCCCACTG 258 || |||| | || || ||||||| |||||| ||| | || | |||| || | |||| | Sbjct 620 AACTCGCCGGACCGTTCTACAAAAAGTACGCGGTCCCTCATATAAAGAGG--TTCCACAG 563 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTT 318 |||||| || | ||||||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 562 CTTGTAAACACAGGGTTTCAGGTTCTATTTCACTCCCCTC-CCGGGGTCCTTTTCACCTT 504 Query 319 TCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTC 378 |||||||||||||||||||||||||||||| | ||||||||||||| | ||||||| Sbjct 503 TCCCTCACGGTACTAGTTCACTATCGGTCACTAGAGAGTATTTAGCCTTAGGAGATGGTC 444 Query 379 CCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 | |||| |||| || | |||| |||| |||| ||||| Sbjct 443 CTCCCAGATTCCAACGAGATTTCACGTGTCTCGTCGTACTC 403 >seq3737 Length=911 Score = 100 bits (110), Expect = 7e-19 Identities = 84/101 (83%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 217 TACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTT 276 ||||||||| |||| ||||||| || | ||||| ||| |||||| ||| ||||||| Sbjct 814 TACAAAAGGCACGCCATCACCCATTAACG--GGCTCTGACTACTTGTAAGCACACGGTTT 871 Query 277 CAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 |||| |||||||||||||||| |||||||| |||||| ||| Sbjct 872 CAGGTTCTATTTCACTCCCCT-TCCGGGGTGCTTTTCACCT 911 >seq980 Length=1537 Score = 87.8 bits (96), Expect = 4e-15 Identities = 80/99 (81%), Gaps = 4/99 (4%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271 |||| | ||||||| |||| ||| ||| ||| ||||| || ||||||| | |||| Sbjct 251 CATTCTGCAAAAGGCACGCCGTCCGCCACAAAAC---GCTCCGACCGCTTGTAAGTATAC 307 Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTT 310 ||||||||| ||||||||||||||||| ||||||| ||| Sbjct 308 GGTTTCAGGTTCTATTTCACTCCCCTC-CCGGGGTGCTT 345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241439647360