Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq3336 279 1e-72 seq5051 221 2e-55 seq696 131 3e-28 >seq3336 Length=967 Score = 279 bits (308), Expect = 1e-72 Identities = 244/304 (80%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 304 GGCGTCGCTGCATCAGGGTTGCCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 245 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| Sbjct 244 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCACCCTCTCAGGCCGGCTACTGAT 185 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||||||| ||| | | ||||||| |||||| | |||| | |||||| | Sbjct 184 CGTCGCCTTGGTGGGCCGTTACCCCTCCAACTAGCTAATCAGACGCGGGTCCATCTCATA 125 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 | | ||| || | |||| ||| || ||||||||||||||| || Sbjct 124 CCACCGGAGTTTTTCACACCGGGCCATGCAGCCCTGTGCGCTTATGCGGTATTAGCTATC 65 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||||| ||||| || | || ||| ||||| | ||| ||||||||||||| ||| Sbjct 64 GTTTCCAATAGTTATCCCCCGCTATGAGGTAGGTTACCTACGCGTTACTCACCCGTTCGC 5 Query 301 CACT 304 ||| Sbjct 4 AACT 1 >seq5051 Length=722 Score = 221 bits (244), Expect = 2e-55 Identities = 154/175 (88%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct 321 GGCGTCGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 380 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| ||| |||||||| |||||| || Sbjct 381 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTATGTAT 440 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 ||||| ||||||| || ||| ||||||||||| |||||| | |||| | ||||| Sbjct 441 CGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCAGACGCGGGTCCATC 495 >seq696 Length=1733 Score = 131 bits (144), Expect = 3e-28 Identities = 96/112 (86%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 64 TCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGT 123 |||||||||||||||||||||| |||||||| ||| |||||||| |||||| ||||| Sbjct 1 TCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTATGCATCGT 60 Query 124 CGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 || ||||||| || ||| ||||||||||| ||||| ||||| ||||||||| Sbjct 61 CGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATAGGCCGTGAGCCCATC 112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998271056640