Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2364 145 6e-33 seq12140 113 4e-23 seq980 87.8 1e-15 >seq2364 Length=1112 Score = 145 bits (160), Expect = 6e-33 Identities = 126/155 (81%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || |||| ||||||| ||| |||||||| Sbjct 578 CGAGTTGCAGCCTACAATCCGAACTGAGACCGGCTTTTTGGGATTTGCTTGACCTCGCGG 637 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || || ||||| ||||| | |||||||| ||||||| ||||| |||||||| ||| Sbjct 638 TTTCGCTGCCCTTTGTAT-TGCCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCAT 696 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || || ||||||||||||||||||||||||||||| Sbjct 697 GATGATTTGACGTCATCCCCACCTTCCTCCGGTTT 731 >seq12140 Length=4113 Score = 113 bits (124), Expect = 4e-23 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||||| ||||| ||| || |||| |||||| ||||| || | Sbjct 622 TCGAGTTGCAGACTACGATCCGAACTGAGACCGGCTTTAAGGGATTCGCTCCGGGTCACA 563 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || |||| |||| |||||||| | | ||||||||| | |||||||| || Sbjct 562 GCATCGCAACCCTTTGTACCGGCCATTGTAGCATGCGTGAAGCCCAAGACATAAGGGGCA 503 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCG 152 ||| || ||||||||||||||||||||||||| Sbjct 502 TGATGATTTGACGTCATCCCCACCTTCCTCCG 471 >seq980 Length=1537 Score = 87.8 bits (96), Expect = 1e-15 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||||| | |||||||||||| |||||||||||||||||| Sbjct 1470 CCATTGTAGCACGTGTGTAGCCCTGGTCGTAAGGGCCATGATGACTTGACGTCATCCCCA 1529 Query 143 CCTTCCTC 150 |||||||| Sbjct 1530 CCTTCCTC 1537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415947952550