Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq5051 282 7e-74 seq3336 277 3e-72 seq6208 87.8 3e-15 seq12140 84.2 4e-14 >seq5051 Length=722 Score = 282 bits (312), Expect = 7e-74 Identities = 218/259 (84%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 32 GTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTACGCATTTCACCGCTAC 91 |||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 GTCCAGAGAGCCGCCTTCGCCACTGGTGTTCCTCCTAATATCTACGCATTTCACCGCTAC 60 Query 92 ACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTTTCAAATGCAGGCTATG 151 || |||||||| | ||||| | ||||| || ||||||||||||||||| | | Sbjct 61 ACCTGGAATTCCACCTCCCTCTTCCCCACTCTAGCTCAACAGTTTCAAATGCAGTCCCGG 120 Query 152 GGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCA 211 |||| ||||| ||||||||| ||||||| | ||| |||| | ||||||||||||| Sbjct 121 GGTTAAGCCCCGGTATTTCACATCAGACTTGCTCTGCCGTCTACGCTCCCTTTACACCCA 180 Query 212 ATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 271 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 GTAAATCCGGATAACGCTTGCCCCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCC 240 Query 272 GTGGCTTATTCCTCAGGTA 290 | ||||| || ||||||| Sbjct 241 GGGGCTTCTTAGTCAGGTA 259 >seq3336 Length=967 Score = 277 bits (306), Expect = 3e-72 Identities = 228/278 (82%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||||||||||||| | |||| || ||||||||||||| ||||| Sbjct 666 CCCACGCTTTCGAGCCTCAGCGTCAGTTACAGACCAGAAAGCCGCCTTCGCCACCGGTGT 607 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||||| |||||||| | || || | |||| Sbjct 606 TCCTCCATATATCTACGCATTTCACCGCTACACATGGAATTCCACTCTCCCCTTCTGCAC 547 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||| ||||||| || |||| | ||| ||| | ||||||||| |||| Sbjct 546 TCAAGTTCTCCAGTTTCCAACGCAGACCCACTGTTAAGCAGTGGGCTTTCACATCAGACT 487 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | |||||||| ||| |||||| |||||||| |||||| |||||||| ||||||| Sbjct 486 TAAAAAACCGCCTACGCGCGCTTTACGCCCAATAATTCCGGACAACGCTTGGGACCTACG 427 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||||||||||||||||||| |||| Sbjct 426 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTCGCTT 389 >seq6208 Length=560 Score = 87.8 bits (96), Expect = 3e-15 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 208 CCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTT 267 |||| ||| |||| |||||||||| ||| |||||||||||||||||||||||| |||| Sbjct 560 CCCAGTAATTCCGATTAACGCTTGCACCCTCCGTATTACCGCGGCTGCTGGCACGGAGTT 501 Query 268 AGCCGTGGCTTATTCCTCAGGTA 290 ||||| |||| ||| | |||| Sbjct 500 AGCCGGTGCTTCTTCTGCGGGTA 478 >seq12140 Length=4113 Score = 84.2 bits (92), Expect = 4e-14 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||||||||||||| ||||||||||||| || | |||| | ||||||||||||| ||||| Sbjct 71 CCCACGCTTTCGCTCCTCAGCGTCAGTAACAGCCCAGAGAGCCGCCTTCGCCACCGGTGT 12 Query 61 TCCTCC 66 |||||| Sbjct 11 TCCTCC 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828696305465