Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq2036 131 1e-28 seq12140 91.5 1e-16 >seq2036 Length=1179 Score = 131 bits (144), Expect = 1e-28 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||||||||||||||||| |||||||||||||| | || Sbjct 614 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCATTCGGTACCACCGGATCACTAAGCCCGA 673 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| |||||| ||||||||| |||||| | ||| |||| ||||||| | Sbjct 674 CTTTCGTCCCTGCTCGAGTTGTAGCTCTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCT 733 Query 121 CACTACGATTTCCGACC 137 | ||||||| ||| Sbjct 734 GCGAATGATTTCCAACC 750 >seq12140 Length=4113 Score = 91.5 bits (100), Expect = 1e-16 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||| ||||||| | ||||||||||||||| || Sbjct 3770 TACCTTTTATCCGTTGAGCGATGGCGCTTCCATACGCCACCACCGGATCACTATCTCCGA 3711 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || |||| || |||||| | ||| ||| ||||||| Sbjct 3710 CTTTCGTCCCTGCTCGACCCGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTGCACT 3653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351957380500