Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq2036 120 3e-25 seq12140 111 1e-22 >seq2036 Length=1179 Score = 120 bits (132), Expect = 3e-25 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||| | ||||||||||||||| | || |||||| |||| Sbjct 626 GTTGAGCGATGGCCCTTCCATTCGGTACCACCGGATCACTAAGCCCGACTTTCGTCCCTG 685 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 |||||| || ||||||||||||||| ||| |||| ||||||| | | ||| || Sbjct 686 CTCGAGTTGTAGCTCTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTGCGAATGATTTC 745 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | || ||||| | || ||||||||| Sbjct 746 CAACCAATCTGAGGGAACCTTTGGGCGCCTCCGTTA 781 >seq12140 Length=4113 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||| ||||||| | |||||||||||||||| || |||||| |||| Sbjct 3758 GTTGAGCGATGGCGCTTCCATACGCCACCACCGGATCACTATCTCCGACTTTCGTCCCTG 3699 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||||| |||| ||||||||| ||| ||| ||||||| | | | ||| | Sbjct 3698 CTCGACCCGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTGCACTCAACACCTGATTGC 3639 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 3638 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTA 3603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473540745980