Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq12140 349 5e-94 seq2036 212 1e-52 seq5421 172 9e-41 >seq12140 Length=4113 Score = 349 bits (386), Expect = 5e-94 Identities = 238/268 (89%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 |||||| |||||||||| |||||| ||||||||||| ||| ||||| ||||| |||| Sbjct 4099 GGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCCTTCCGAACGTAGCTAACCAGCCATGC 4040 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 |||||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||| Sbjct 4039 CCTTGGCAGGACAACTGGCACACCAGAGGTTCGTCCGTCCCGGTCCTCTCGTACTAAGGA 3980 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 ||| | |||||| ||||| |||| | | |||||||||||||||||||||| ||||||| Sbjct 3979 CAGACCTTCTCAAGTTTCCAACGCGCGCAGCGGATAGGGACCGAACTGTCTCACGACGTT 3920 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| | Sbjct 3919 CTGAACCCAGCTCGCGTGCCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCAACTCC 3860 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 3859 AGCCCCAGGATGCGACGAGCCGACATCG 3832 >seq2036 Length=1179 Score = 212 bits (234), Expect = 1e-52 Identities = 137/150 (91%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 78 ACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCT 137 ||||| ||| ||||||||||| ||||| | ||||||||||||||| | ||| |||||| Sbjct 355 ACAACCGGTACACCAGAGGTTCGTCCACTCTGGTCCTCTCGTACTAGGAGCAGATCCTCT 414 Query 138 CAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAG 197 |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| Sbjct 415 CAAATTTCCTACGCCCGCGACGGATAGGGACCGAACTGTCTCACGACGTTCTGAACCCAG 474 Query 198 CTCGCGTGCCTCTTTAATGGGCGAACAGCC 227 |||||||||| ||||||||||||||||||| Sbjct 475 CTCGCGTGCCGCTTTAATGGGCGAACAGCC 504 >seq5421 Length=676 Score = 172 bits (190), Expect = 9e-41 Identities = 128/150 (85%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| |||||||||| |||||| |||||||||||| ||| ||| ||| | Sbjct 150 GAGGGGGGCTTCACGCTTAGATGCTTTCAGCGTTTATCCCTTCCAGGCTTGGCTACCCTG 91 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||||| |||||| | |||| ||| |||||| || |||||||||||||||||||||| Sbjct 90 CCATGCAGTTGGCACTGCAACAGGTACACCAGCGGCCCGTCCATCCCGGTCCTCTCGTAC 31 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGC 151 ||||||||||||||||||||| |||||||| Sbjct 30 TAAGGACAGCTCCTCTCAAATATCCTACGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780702310940