Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10431 188 1e-45 seq8236 91.5 3e-16 >seq10431 Length=139373 Score = 188 bits (208), Expect = 1e-45 Identities = 234/312 (75%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTC--GCCGGCTTCTT 77 ||||||||| || |||||||||||| ||| | ||| | ||| | | |||||| Sbjct 92848 GAGCGAGACTCTAGCCTGCTAAATAGT--GGCTGGATTTTT-GAGTCCAGTCTACTTCTT 92792 Query 78 AGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCC 136 ||||||| | ||| | ||||| || | ||||| | |||||||||||||||||||| Sbjct 92791 AGAGGGATAAGCGGTGTTTAGCCGCACGA-GATTGAG-CGATAACAGGTCTGTGATGCCC 92734 Query 137 TTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGG 196 |||||||| | |||| |||||||||||||| || ||| || | | ||| | | | Sbjct 92733 TTAGATGTCCGGGGCTGCACGCGCGCTACAATGGAAGAATCAGCTGGCCTATC--CATTG 92676 Query 197 CCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTA 256 ||| |||| | ||||| | | ||||||| |||| ||||||| | |||| ||||| Sbjct 92675 CCGAAAGGCATTGGTAAACCGTTGAAACTCTTCCGTGACCGGGATAGGGAATTGTAATTA 92616 Query 257 TTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCC 316 || | ||| |||||||||| ||||||||| | | ||||||||| | || ||||||||||| Sbjct 92615 TTTCCCTTGAACGAGGAATTCCTAGTAAGTGTGAGTCATCAGCTCACGCTGATTACGTCC 92556 Query 317 CTGCCCTTTGTA 328 ||||| |||||| Sbjct 92555 CTGCCATTTGTA 92544 Score = 176 bits (194), Expect = 9e-42 Identities = 174/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| | |||||||||||||||||||||||||||| | |||| ||||||||||||| Sbjct 63306 AGATTGAG-CGATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTAC 63364 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 | || ||| || | | ||| | | |||| |||| | ||||| | | ||||| Sbjct 63365 AATGGAAGAATCAGCTGGCCTATC--CATTGCCGAAAGGCATTGGTAAACCGTTGAAACT 63422 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 || |||| ||||||| | |||| ||||||| | ||| |||||||||| ||||||||| Sbjct 63423 CTTCCGTGACCGGGATAGGGAATTGTAATTATTTCCCTTGAACGAGGAATTCCTAGTAAG 63482 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | | ||||||||| | || |||||||||||||||| |||||| Sbjct 63483 TGTGAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 63525 >seq8236 Length=205915 Score = 91.5 bits (100), Expect = 3e-16 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 221 AAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTA 280 ||||||| |||| | |||| | |||| ||||||| | ||| |||| ||||| |||| Sbjct 73473 AAACTCTTCCGTGAGCGAAATAGGGAATTGTAATTATTTCCCTTGAACGGGGAATTCCTA 73414 Query 281 GTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| | ||||||||| | || |||||||||||||||| |||||| Sbjct 73413 GTAAGTGTCAGTCATCAGCTCACGCTGATTACGTCCCTGCCATTTGTA 73366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947077669120