Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1286 370 4e-100 seq2971 235 2e-59 seq12140 172 2e-40 seq980 167 8e-39 seq473 159 1e-36 seq2475 136 1e-29 >seq1286 Length=1409 Score = 370 bits (410), Expect = 4e-100 Identities = 376/483 (78%), Gaps = 9/483 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACA-GTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| ||||| | || || |||| ||||||||||||| |||||||| |||| Sbjct 1146 CGAGTCTTAACTGGGCGTTAAGTTGCAGGGTATAGACCCGAAACCCGGTGATCTAGCCAT 1087 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||||| |||||||| ||||||| ||||||| |||||||||||||||| Sbjct 1086 GGGCAGGTTGAAGGTTGGGTAACACTAACTGGAGGACCGAACCGACTAATGTTGAAAAAT 1027 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| ||||| | |||||||||||| || ||||| ||| ||||||||||||| Sbjct 1026 TAGCGGATGACTTGTGGCTGGGGGTGAAAGGCCAATCAAACCGGGAGATAGCTGGTTCTC 967 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTA-TCACCATCGGGGGTAGAGCACTGTTATG 239 |||||| |||||||||||| ||||| | | ||| | |||||||||||||||||| | Sbjct 966 CCCGAAAGCTATTTAGGTAGCGCCTCGTGAATTCATCTCCGGGGGTAGAGCACTGTTTCG 907 Query 240 GCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 || |||||||||| ||||||||||| || |||||||| ||||| | | | ||| Sbjct 906 GCAAGGGGGTCATCCCGACTTACCAACCCGATGCAAACTGCGAATACCGGAGAATGTTAT 847 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | |||||| | ||| ||||||||| |||||| ||||| || || || ||| Sbjct 846 CACGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAGAGGGAAACAACCCAGACC 789 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 ||||||||| ||| || | | | ||||| | ||||| || || || ||||| Sbjct 788 GCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGA--AACGATGTGGGAAGGCCCAGACA 731 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 || ||||||||||||| |||||||||| ||||||||||| |||||| |||||||| ||| Sbjct 730 GCCAGGATGTTGGCTTAGAAGCAGCCA-TCATTTAAAGAAAGCGTAATAGCTCACTGGTC 672 Query 478 GAG 480 ||| Sbjct 671 GAG 669 >seq2971 Length=1016 Score = 235 bits (260), Expect = 2e-59 Identities = 401/568 (71%), Gaps = 20/568 (4%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| ||| ||| ||||||||||||||| ||||||||||| | Sbjct 231 CGAGTCTGAATAGGGCGTTTAGTATTTGGTCGTAGACCCGAAACCAGGTGATCTACCCTT 290 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 || |||| ||||| ||| |||| | | |||||| |||||| ||| |||||||| Sbjct 291 GGTCAGGTTGAAGCTGCCGTAAGAGGTAGTGGAGGACCGAACGCACATCCGTTGAAAAGG 350 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 || |||||| ||||| |||||| |||| | || | ||| ||| ||||||||||||| Sbjct 351 GTGGCGATGAGGTGTGGATAGGGGAGAAATTCCAATCGAACCCGGAGATAGCTGGTTCTC 410 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTAT--CACCATCGGGGGTAGAGCACTGTTAT 238 ||||| |||||| ||||| |||| ||| || |||||||||||| | Sbjct 411 CTCGAAATAGCTTTAGGGCTAGCCTC-GGTATAGATTCAT-GGAGGTAGAGCACTGAATT 468 Query 239 GGCTAGGGG--GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATC---AG 293 ||||||| |||| | |||||| || || |||||||||||||| |||| Sbjct 469 TCCTAGGGGGCGTCAAAG---CTTACCGAAGAATATCAAACTCCGAATGC-CATCGAACC 524 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 |||| ||||||| || || | | |||| | | ||| ||| |||| || Sbjct 525 GATTAC--CGGGAGTCAGACTATACGAGATAAGTTGGATAGTCGAAAGGGAAAGAGCCCA 582 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 ||| ||||||||| ||| || || | ||||| || || || || | || | || Sbjct 583 GACCTCCAGCTAAGGTCCCAAAGTGCGTGTTAAGTGGAA--AAGGATGTGGGGTTTCAAA 640 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||| |||||||||||||| ||||||||||| |||| ||||||||||||| |||||||| Sbjct 641 GACAACTAGGATGTTGGCTCAGAAGCAGCCATCCATTCAAAGAGTGCGTAATAGCTCACT 700 Query 474 AGTCGAGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGCAGTGGG 532 |||||| ||| ||| || ||| | |||| | || |||||||| | || Sbjct 701 GGTCGAGAGGTCCTGCGCCGAAAATGTACCGGGGCTGAAACACGACACCGAAGCTGAGGA 760 Query 533 ATCATTTATATGATCGGTAGGGGAGCAT 560 |||| || |||| ||||| ||||||| Sbjct 761 ATCACATA-GTGATTGGTAGAGGAGCAT 787 >seq12140 Length=4113 Score = 172 bits (190), Expect = 2e-40 Identities = 156/198 (79%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| ||| || | | |||||||||| | ||||||||||||||| Sbjct 1868 CGAGTCTGAAGAGGGCGTTGAGTGGCGTGATCTAGACCCGAAGCGAAGTGATCTACCCAT 1927 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| ||||| | | | |||||| ||||||||||| |||||||| Sbjct 1928 GGCCAGGTTGAAGNNNNNNNNAGAGCGCGTGGAGGCCCGAACCCACTTCAGTTGAAAATG 1987 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||||||||||||||||| || ||||||| | ||||||||||||| Sbjct 1988 GAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCTC 2047 Query 181 TCCGAAAACTATTTAGGT 198 |||||| |||||||| Sbjct 2048 CCCGAAATGCATTTAGGT 2065 Score = 86.0 bits (94), Expect = 2e-14 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 280 CGAATGCGCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAG 339 ||||||| | || || | || || |||||| |||| | |||| | | | |||| Sbjct 2147 CGAATGCCGGTAAGGTTCAGCGTGGCAGTGAGACAGTGGGGGATAAGCTTCATTGTCGAG 2206 Query 340 AGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGA 399 ||| || | || ||| | | |||||||||| || | ||||||| | || || Sbjct 2207 AGGGAAACAGCCCAGACCACCGACTAAGGCCCCTAAGCGTGTGCTAAGTGGGA--AAGGA 2264 Query 400 AGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTG 459 || ||||| ||||| | |||| |||||||| |||||||||| | || |||||||| Sbjct 2265 TGTGGAGTTGCTCAGACAACCAGGAGGTTGGCTTAGAAGCAGCCACCC-TTGAAAGAGTG 2323 Query 460 CGTAACAGCTCACTAGTCGAG 480 ||||| |||||||| ||| || Sbjct 2324 CGTAATAGCTCACTGGTCAAG 2344 >seq980 Length=1537 Score = 167 bits (184), Expect = 8e-39 Identities = 152/188 (81%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| ||| |||||| ||| || | | |||||||||| | ||||||||||||||| Sbjct 187 CGAGTCTGAAGAGGGCGTTGAGTGGCGTGATCTAGACCCGAAGCGAAGTGATCTACCCAT 128 Query 61 GGCCAGGATGAAGGTGCG-GTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 ||||||| ||||| ||| |||| | || ||||||| ||||||||||| |||||||| Sbjct 127 GGCCAGGTTGAAGC-GCGTGTAAGAGGCGCTGGAGGACCGAACCCACTTCAGTTGAAAAG 69 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||| |||||| ||||||||||||||||| || |||||| || |||||| ||||| Sbjct 68 TGTTCGGACGAGCTGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGCGATAGCTTGTTCT 9 Query 180 CTCCGAAA 187 |||||||| Sbjct 8 CTCCGAAA 1 >seq473 Length=1908 Score = 159 bits (176), Expect = 1e-36 Identities = 158/203 (78%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||||||| |||| ||||||||| |||| |||||||| ||||| || | |||| Sbjct 1217 TAGACCCGAAACCATGTGACCTACCCATGAGCAGGTTGAAGGTGAGGTAAAACTCACTGG 1158 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| ||||||| | |||||||| | |||||| ||||||||| || |||| | Sbjct 1157 AGGACCGAACCAGGGCACGTTGAAAAGTGCTTGGATGACTTGTGGGTAGCGGAGAAATTC 1098 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGT-A 211 |||| |||||||| |||||||||||||||||||| |||||| || |||||| | Sbjct 1097 CAAACGAACTTGGAGATAGCTGGTTCTCTCCGAAATAGCTTTAGGGCTAGCGTCAAGTGA 1038 Query 212 TCACCATCGGGGGTAGAGCACTG 234 | | || || |||||||||||| Sbjct 1037 TGATTATTGGAGGTAGAGCACTG 1015 Score = 111 bits (122), Expect = 5e-22 Identities = 104/130 (80%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 || ||| | ||||||||| ||| |||| | ||||| || || || || |||| Sbjct 900 CCAGACCACCAGCTAAGGTCCCAAAATATATGTTAAGTGGAA--AAGGATGTGGCGTTGC 843 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| ||||| Sbjct 842 CCAGACAACTAGGATGTTGGCTTAGAAGCAGCCAT-CATTTAAAGAGTGCGTAATAGCTC 784 Query 471 ACTAGTCGAG 480 |||||||||| Sbjct 783 ACTAGTCGAG 774 >seq2475 Length=1094 Score = 136 bits (150), Expect = 1e-29 Identities = 133/170 (78%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 ||||||| ||| || | |||||| ||||||||||||||||||||||||||||| |||| Sbjct 410 ACGAAGTGTGACCGCCA-GACAGCCGGGATGTTGGCTTGGAAGCAGCCATTCATTCAAAG 468 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||||||||||||||||||| ||| | |||| ||||||||||||||| || || Sbjct 469 AGTGCGTAACAGCTCACTAGTAGAGTGGCGGGGCATGGATAATAATCGGGCATGAAACAC 528 Query 516 TCTACCGAAGCAGTGGGATCATTT-----ATATGATCGGTAGGGGAGCAT 560 ||||||| | |||| || | | | | || ||||||||||||| Sbjct 529 GGTACCGAAACTGTGGAATGGTGTCTAGCACACCATTGGTAGGGGAGCAT 578 Score = 129 bits (142), Expect = 2e-27 Identities = 146/191 (76%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC---AGTC-GCTGGGTGTAGACCCGAAACCAA-GTGATCTAC 56 ||||||||||||||||| | |||| || || | | |||||||| || | | || |||| Sbjct 7 CGAGTCCGAACAGGGCGCCTTGAGTCTGCCGGAT-TGGACCCGAAGCCCATGCGAGCTAC 65 Query 57 CCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAA 116 |||||| | || ||||| | |||||| | |||||| || ||||| | |||||| Sbjct 66 CCATGGACCGGGTGAAGCCCCCGTAACAGGAGGTGGAGGCCCAAACCCGTGACCGTTGAA 125 Query 117 AAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGT 176 || | |||||||||||||||| || | ||||| || | ||| || || |||||||||| Sbjct 126 AAGGTCTGGGATGAGCTGTGGGTGGGAGCGAAAGACTTATCAAGCTGGGTAATAGCTGGT 185 Query 177 TCTCTCCGAAA 187 ||||||||||| Sbjct 186 TCTCTCCGAAA 196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689381788160