Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq12140 583 3e-164 seq2036 212 2e-52 seq473 167 8e-39 >seq12140 Length=4113 Score = 583 bits (646), Expect = 3e-164 Identities = 465/565 (82%), Gaps = 10/565 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||||| ||||||||||||||||||||||| |||||| |||||||||||| Sbjct 3697 TCGACCCGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTGCACTCAACACCTGATTGCC 3638 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 3637 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTAGGAGG-CAACCGCCCCAG 3579 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 |||||||||||| ||||||||||||| | || ||| || ||||||| |||||| Sbjct 3578 TTAAACTACCCATCAGGCACTGTCCCTGAACCCGATTTCCCTCCGAGGTTAGGAATCCAC 3519 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCAT-CATAG 239 || || ||||||||||||||| | || || Sbjct 3518 TATGGCCAGAGTGGTATTTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCACAG 3459 Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 ||||||||||||||||| || |||||||||| |||||||||| ||||||| |||||| Sbjct 3458 CCTCCCACCTATCCTACAAAAGCCGCACCGAACACCAATACCAAACTATAGTAAAGGTCT 3399 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| ||| Sbjct 3398 CGGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTACTGCAATTTCGCCG 3339 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | |||||||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 3338 AGTTCATGGTTGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 3279 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3278 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTA 3219 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 |||| |||| || || | | || || || ||||||||||||||||||||||| Sbjct 3218 AATTCTCCGCTTC-GAC------TTGCGT-CTGACAGGTCCTCTTAACCTTCCAGCACCG 3167 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 |||||| |||||||||||||| ||| Sbjct 3166 GGCAGGAGTCAGTCCGTATACATCG 3142 >seq2036 Length=1179 Score = 212 bits (234), Expect = 2e-52 Identities = 194/244 (80%), Gaps = 1/244 (0%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 |||| ||||||||| ||| | || || ||||| ||| || ||| ||| ||| Sbjct 926 CTCCTACCTATCCTGTACATGTGGTACAGATACTCAATATCAAACTGCAGTAAAGCTCCA 985 Query 301 -GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| ||||||| |||| | ||| ||||||| || ||||| |||||||||| Sbjct 986 TGGGGTCTTTCCGTCCTGTCGCGGGTAACCTGCATCTTCACAGGTACTAAAATTTCACCG 1045 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | |||||||||| | || ||||||| ||||||| ||||||||||||||| Sbjct 1046 AGTCTCTCGTTGAGACAGTGCCCAAATCATTACGCCTTTCGTGCGGGTCGGAACTTACCC 1105 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 1106 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTC 1165 Query 480 AATT 483 |||| Sbjct 1166 AATT 1169 Score = 156 bits (172), Expect = 1e-35 Identities = 129/156 (83%), Gaps = 1/156 (1%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||| ||||| |||||||||||||||||||| ||| || ||||| | ||||| || Sbjct 687 TCGAGTTGTAGCTCTCGCAGTCAAGCTCCCTTCTGCCTTTGCACTCTGCGAATGATTTCC 746 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||| ||||||||||||||||||||||||||||| ||| ||| ||| |||||||||| Sbjct 747 AACCAATCTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTAGGA-GGCGACCGCCCCAG 805 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT 156 | ||||| ||| ||| |||||||| |||||| ||| Sbjct 806 TCAAACTGCCCGTCAGACACTGTCCGCAACCCGGAT 841 >seq473 Length=1908 Score = 167 bits (184), Expect = 8e-39 Identities = 141/175 (81%), Gaps = 10/175 (6%) Strand=Plus/Plus Query 389 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGT 448 ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 1 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 60 Query 449 TATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGT 508 ||||||||| |||||||||||||||||||||||| || | | || Sbjct 61 TATAGTTACGGCCGCCGTTTACTGGGGCTTCAATT----------CAGATCTTCGCTTGC 110 Query 509 GCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTC 563 ||| | ||||||||||||||||||||||||||||||||| || ||||| || Sbjct 111 GCTAAACCCTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATC 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702180135040