Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq5051 163 6e-38 seq3336 140 7e-31 seq696 75.2 2e-11 >seq5051 Length=722 Score = 163 bits (180), Expect = 6e-38 Identities = 203/279 (73%), Gaps = 18/279 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||| || | |||||| ||| Sbjct 219 GGCTGCTGGCACGTAGTTAGCCGGGGCTTCTTAGTCAGGTAC---------------CGT 263 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | ||| |||||| | ||||| ||||||| ||| || |||||||| |||||| Sbjct 264 C--ATTATTTCTTCCCTGCTGAAAGAGGTTTACATCCCGAAGT-CCTTCATCACTCACGC 320 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| || ||| |||||| ||||||||| |||||||||||||||||| Sbjct 321 GGCGTCGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 380 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||| | |||| || Sbjct 381 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTATGTAT 440 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || |||| ||| ||||| | || |||| ||||| Sbjct 441 CGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAAT 479 >seq3336 Length=967 Score = 140 bits (154), Expect = 7e-31 Identities = 197/279 (71%), Gaps = 7/279 (3%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||| ||||||||| |||| | | || ||| || Sbjct 417 GGCTGCTGGCACGTAGTTAGCCGTCGCTTTCTGGTTAGTTACCGTCA-----NNNNNNNN 363 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 ||| ||||| | | |||| ||||| ||||| | ||||||| || |||||| Sbjct 362 NNNNNNNTTTCCTCCCTGCTGATAGAACTTTAC-ATCCG-AAAACCTTCTTCACTCACGC 305 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | |||| |||| | | |||||| ||||||||| |||||||||||||||||| Sbjct 304 GGCGTCGCTGCATCAGGGTTGCCCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 245 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||||||||| | | |||||||| | ||| || Sbjct 244 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCACCCTCTCAGGCCGGCTACTGAT 185 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || |||||||||||||||| || |||| ||||| Sbjct 184 CGTCGCCTTGGTGGGCCGTTACCCCTCCAACTAGCTAAT 146 >seq696 Length=1733 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/94 (78%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 186 TGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAG 245 ||| |||||||||||| ||| ||||| || | |||||||| | |||| |||||| | Sbjct 3 TGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCTATGCATCGTCG 62 Query 246 GCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 || |||| ||||||||| | || |||| ||||| Sbjct 63 CCTTGGTGAGCCGTTACCTCACCAACTAGCTAAT 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068661964480