Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq10431 82.4 1e-13 >seq10431 Length=139373 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 89893 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 89950 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct 89951 GGTCCGAAGCTAACATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 90004 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 95158 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 95101 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct 95100 GGTCCGAAGCTAACATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 95047 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| || | |||||| | |||||| || || | || | | || | Sbjct 97844 GTACGAGAGGAACAGCAGG-TTCAGAC-ATTTGGTTCATGGACTTGACCGATCGGTCAAT 97787 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||| |||||| |||||||| |||||||||||||||||||||||| Sbjct 97786 GGTCCGAAGCTAACATCTGGGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 97733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819097506560