Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq10431 275 2e-71 seq10590 167 7e-39 >seq10431 Length=139373 Score = 275 bits (304), Expect = 2e-71 Identities = 336/452 (74%), Gaps = 20/452 (4%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 93678 TATTTTTAGTCACTATCTCATCTGTTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 93737 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 93738 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 93797 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 93798 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 93855 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | | |||| | | |||| | |||| | | |||||| || ||| ||| Sbjct 93856 TTCGGAATATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAAAT 93912 Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 || |||||| | ||| ||| |||||||| | ||||| ||| ||||| |||||| Sbjct 93913 GCACCCGAAAGTGATTG--ATTTGCTCTAATAATTGCACCCTTTCAAAAGTCAGGGTTTA 93970 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || |||||||||||||| ||||||||| | |||||||| ||||| | | |||| Sbjct 93971 TTCGCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----AAAGGTCGTTCCGAATA 94025 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || || | ||| | ||||||||| ||||||||||| || | |||| | | || Sbjct 94026 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTCAAAGAT------GAACTCGA 94079 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492 ||||||||||||||||||| | ||||||| Sbjct 94080 CATGCATGGCTTAATCTTTAAACTGAGCATAT 94111 Score = 269 bits (298), Expect = 8e-70 Identities = 335/452 (74%), Gaps = 20/452 (4%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 96140 TATTTTTAGTCACTATCTCATCTGTTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 96199 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||| |||||||||||||||| ||||||||| |||| |||||| Sbjct 96200 TTGGATGTGGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTA 96259 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| |||||||||| | | || |||||||| | |||||||||||||| | || Sbjct 96260 CCCGTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGACACTTT 96317 Query 223 AATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGA 282 | | |||| | | |||| | |||| | | |||||| || ||| ||| Sbjct 96318 TTCGGAATATCGGC-GAACAAG--CCGCCGATATGCTGCGTTATTCAGAGTCAGCAAACT 96374 Query 283 GC-CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTT- 340 || |||||| | ||| ||| |||||||| | ||||| ||| ||||| |||||| Sbjct 96375 GCACCCGAAAGTGATTG--ATTTGCTCTAATAATTGCACCCTTTCAAAAGTCAGGGTTTA 96432 Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATA 400 || |||||||||||||| ||||||||| | |||||||| |||| | | |||| Sbjct 96433 TTTGCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----AAAGGACGTTCCGAATA 96487 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGA 460 || || | ||| | ||||||||| ||||||||||| || | |||| | | || Sbjct 96488 AATGACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTCAAAGAT------GAACTCGA 96541 Query 461 CATGCATGGCTTAATCTTTGAGACAAGCATAT 492 ||||||||||||||||||| | ||||||| Sbjct 96542 CATGCATGGCTTAATCTTTAAACTGAGCATAT 96573 Score = 95.1 bits (104), Expect = 4e-17 Identities = 110/149 (74%), Gaps = 11/149 (7%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 |||||||||||||| ||||||||| | |||||||| ||||| | | |||||| Sbjct 105773 GCATGTATTAGCTCCAGAATTACCGCAGTTATCCA-----AAAGGTCGTTCCGAATAAAT 105827 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 || | ||| | ||||||||| ||||||||||| || | |||| | | ||||| Sbjct 105828 GACATCTGCTCTAATGAGCCGTTCGCAGTTTCTCTTCAAAGAT------GAACTCGACAT 105881 Query 464 GCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||||||| | ||||||| Sbjct 105882 GCATGGCTTAATCTTTAAACTGAGCATAT 105910 >seq10590 Length=136206 Score = 167 bits (184), Expect = 7e-39 Identities = 144/175 (82%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||| | ||||||| ||| | || |||||| ||| || ||||||||||||||||| Sbjct 96624 TATTTTTAGTCACTATCTCATCTGTTCAAGATTGGATAAGTTTCGCGCCTGCTGCCTTCC 96683 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||| |||| |||||||||||| |||||||||||||||| ||||||||| |||| |||| | Sbjct 96684 TTGAATGTAGTAGCCGTTTCTAAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTCA 96743 Query 163 CCCGTTGAT-ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||| || || |||||||||| | | || |||||||| | |||||||||||||| Sbjct 96744 CCC-TTAATAACCATGGTAGACTAATAGACTACCATC--AGGTTGATAGGGCAGA 96795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510204931840