Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq899 120 2e-22 seq7056 111 1e-19 >seq899 Length=82215 Score = 120 bits (132), Expect = 2e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||| || ||||| |||||||| |||||||||||||| || || | ||| || || Sbjct 23009 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTAT 22950 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 || |||||||| ||||| || || |||||| | ||||| | |||||| | | | Sbjct 22949 TACCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGC 22890 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 | |||||| ||||||| || || | || | ||||| ||| | |||| ||| || | Sbjct 22889 CATTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGT 22830 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 ||||||| || |||||||| |||| ||||| Sbjct 22829 TCAGACCTATTCCACCGGCACTCTTAGAGAT 22799 >seq7056 Length=51435 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||| || ||||| ||||||||||||||||||||||| ||||| | ||| || || Sbjct 22462 ACTCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTAT 22521 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 || |||||||| || || || || |||||| | || || | |||||| | | | Sbjct 22522 TACCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGC 22581 Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605 | || ||| ||||||| || || | || | ||||| || | |||| ||| || | Sbjct 22582 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGT 22641 Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGAT 66636 ||||||| || |||||||| |||| ||||| Sbjct 22642 TCAGACCTATTCCACCGGCACTCTTGGAGAT 22672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397505422175600