Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq899 120 2e-22
seq7056 111 1e-19
>seq899
Length=82215
Score = 120 bits (132), Expect = 2e-22
Identities = 153/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485
|||| || ||||| |||||||| |||||||||||||| || || | ||| || ||
Sbjct 23009 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTAT 22950
Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545
|| |||||||| ||||| || || |||||| | ||||| | |||||| | | |
Sbjct 22949 TACCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGC 22890
Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605
| |||||| ||||||| || || | || | ||||| ||| | |||| ||| || |
Sbjct 22889 CATTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGT 22830
Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
||||||| || |||||||| |||| |||||
Sbjct 22829 TCAGACCTATTCCACCGGCACTCTTAGAGAT 22799
>seq7056
Length=51435
Score = 111 bits (122), Expect = 1e-19
Identities = 151/211 (72%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485
|||| || ||||| ||||||||||||||||||||||| ||||| | ||| || ||
Sbjct 22462 ACTCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTAT 22521
Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545
|| |||||||| || || || || |||||| | || || | |||||| | | |
Sbjct 22522 TACCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGC 22581
Query 66546 CGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACAT 66605
| || ||| ||||||| || || | || | ||||| || | |||| ||| || |
Sbjct 22582 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGT 22641
Query 66606 TCAGACCAATACCACCGGCCGTCTTCGAGAT 66636
||||||| || |||||||| |||| |||||
Sbjct 22642 TCAGACCTATTCCACCGGCACTCTTGGAGAT 22672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397505422175600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |