Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000026.1 Length=199 Score E Sequences producing significant alignments: (Bits) Value seq10422 118 1e-24 seq8777 116 4e-24 seq8765 91.5 2e-16 >seq10422 Length=2666 Score = 118 bits (130), Expect = 1e-24 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| ||||| ||||||||||||||||| |||||||||| | |||||| | || | ||| Sbjct 717 GCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCCCAGCTGTCTCAGCAGGCGGAC 776 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||||| | ||||| | || || ||| | | || |||||| ||||| || Sbjct 777 CTCGTTAGTTCAACTTAGCGCGCACTTGGGGGCCTTGGACGAAGGTCCGGGTTCTTTCCC 836 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGC-GCATT 179 ||||||| |||| ||| ||||| ||||||||| ||||| || | | || ||||| Sbjct 837 TCTCGGGACGGGACGTTAGCACCCCGCCCCTCACTCCCGCGG--TGGCCGTCGCGGCATT 894 Query 180 CGGAGTTTGGCAGG 193 ||||||||||| || Sbjct 895 CGGAGTTTGGCTGG 908 Score = 98.7 bits (108), Expect = 1e-18 Identities = 138/190 (73%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| ||||| | | ||||||||||||| |||||| ||| | |||||| || | ||| Sbjct 2375 GCACTCTTTGAACGGATGGCTGCTTCCAAGCCAACGTCCCAGCTGTCTGTGCAGGCGGAC 2434 Query 61 TTCGTTAGATTGACTTATCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTCC 120 ||||||| ||||| | | || ||| | | | | |||||| ||||| || Sbjct 2435 CTCGTTAGCGCAACTTAGGCGGCCCTTGGGGGCCTTGGCCGGTGGTCCGGGTTCTTTCCC 2494 Query 121 TCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGC-GCATT 179 |||||||| ||||| ||| ||||| |||||||||| ||||| ||| | || ||||| Sbjct 2495 TCTCGGGCGCGGACGTTAGCACCCGCGCCCTCACTCCCGCGG-TCGAC-GCCGCGGCATT 2552 Query 180 CGGAGTTTGG 189 |||||||||| Sbjct 2553 CGGAGTTTGG 2562 >seq8777 Length=4537 Score = 116 bits (128), Expect = 4e-24 Identities = 148/196 (76%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| ||||| ||||||||||||||||| |||||||||||| ||||| | | ||||| Sbjct 2617 GCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCATCGAGACCAGAC 2676 Query 61 TTCGTTAGATTGACTTA-TCTGACATTTCTGGGGCATATCTGAGAGTCCGGATTCTTCTC 119 ||||||||| | ||| | | || | | | || | || | ||| ||||||||||| Sbjct 2677 TTCGTTAGACTAACTCAGGCAGA-ACTCCGGGACCTTAGACGGCGGTCTGGATTCTTCTC 2735 Query 120 CTCTCGGGCACGGACCTTACCACCCATGCCCTCACT-CGC-GCGGCATGACTGATGCGCA 177 ||||||||||||||||||| ||||| |||| ||| | | || ||| || || ||| Sbjct 2736 CTCTCGGGCACGGACCTTAGCACCCGCACCCTTACTGCACTGCTACAT-AC-CCTGAGCA 2793 Query 178 TTCGGAGTTTGGCAGG 193 ||||||||| | |||| Sbjct 2794 TTCGGAGTTCGTCAGG 2809 >seq8765 Length=4561 Score = 91.5 bits (100), Expect = 2e-16 Identities = 146/202 (72%), Gaps = 7/202 (3%) Strand=Plus/Minus Query 1 GCAGTCTTTAGATGAATGGCTGCTTCCAGGCCAACATCCTAACTGTCTTATCAATCAGAC 60 ||| ||||| ||||||||||||||||| |||||||||||| |||||| ||| ||| Sbjct 2572 GCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCCTAGCTGTCTGTGCAACGGGAC 2513 Query 61 TTCG-TTAGATTGACTTATCTGACATTTCTGGG-GCATATCTGAGAGTCCGGATTCTTCT 118 || || | ||||| | | ||||||| | || | || ||| || || ||| Sbjct 2512 GCCGTTTTTCTCAACTTAAC-GCGGATTCTGGGACCTTAACCGATGGTCTGGGTTGTTCC 2454 Query 119 CCTCTCGGGCACGGACCTTACCACCCATGCCCTCACTCGCGCGGCATGACTGATGC--GC 176 |||||||| | ||||| ||| ||||| |||||||| | | |||| | |||| || Sbjct 2453 CCTCTCGGCCCCGGACGTTAGCACCCGAAGCCTCACTC-CCATGAATGAAT-ATGCCAGC 2396 Query 177 ATTCGGAGTTTGGCAGGACTTG 198 |||| ||||||| ||||| ||| Sbjct 2395 ATTCAGAGTTTGTCAGGATTTG 2374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537470201016