Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq8777 206 5e-51 seq8765 104 4e-20 seq10422 91.5 3e-16 >seq8777 Length=4537 Score = 206 bits (228), Expect = 5e-51 Identities = 239/321 (74%), Gaps = 1/321 (0%) Strand=Plus/Plus Query 11 GTTATGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAG 70 |||| | ||||||| ||||||||| || || ||||| || |||| || | |||||| Sbjct 2112 GTTAAGCTTAGCGGTTTTTCTCGGGAGTATGGTTACCTGCGCTATCGGCTCTCTCCGAAG 2171 Query 71 GACGTTCCATACTGTCAA-TCTCGACTCTTTCCGTGGATTTGCCTGCGGAAATCAACGTC 129 || || |||| ||| | || ||| |||||||||||||||| ||| | | Sbjct 2172 AGAGTGCCGTACTCTCAGGTTTCAGCTCGGCGCGTGGATTTGCCTGCGCGCCTCATAGCC 2231 Query 130 TACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGT 189 ||||| ||| |||| ||| |||||||||| |||||| ||||||| || |||| |||||| Sbjct 2232 TACACCCTTCAACCTGCTGTTCCGTCAGCAGGCGGCAGTGTCACTGCTCCGTCACCACGT 2291 Query 190 CACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCT 249 | ||| | | ||| |||||||| ||||||| || ||||||| |||||||||||||| Sbjct 2292 CGCCCATGATGGAAGTCACGGAATATTAACCGTGTCAGCCATCGCACTCGCCGTTCGGCT 2351 Query 250 GAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTT 309 | |||| ||||||||| |||| | | || | | | | |||||||||||||||| Sbjct 2352 TATGCTTAGGACCCGACTCACCCCGGGCTGAACAACATCGCCCGGGAAACCTTAGTCTTT 2411 Query 310 CGGCGAGGGGGTTTCCCACCC 330 ||||| | |||| || ||||| Sbjct 2412 CGGCGGGAGGGTATCTCACCC 2432 >seq8765 Length=4561 Score = 104 bits (114), Expect = 4e-20 Identities = 155/211 (73%), Gaps = 13/211 (6%) Strand=Plus/Minus Query 129 CTACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACG 188 |||||| ||| ||| |||||||||||||||| ||| ||||||| ||||||| |||| Sbjct 2955 CTACACCCTTCAACGGGCTATTCCGTCAGCCCGCGCGCCTGTCACTTCTGCGTCTCCACT 2896 Query 189 TCAC-CCT-CAAATGTAGTAACGGAATACTAACCGTTTCTGCCAT--CGGTCTCGCC-GT 243 || ||| || | || ||||||| |||||| | | |||| |||| |||| || Sbjct 2895 TCGTTCCTGCAGCCG--GTCGCGGAATATTAACCGCGTGT-CCATTCCGGTG-CGCCAGT 2840 Query 244 TCGGCTGAACC----TTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAAC 299 ||| ||| | ||| | |||||||||||| | |||||||| || || | |||||| Sbjct 2839 TCGCCTGGCTCCCCGTTAGGCCCCGACTTACCCCGGTCCGATTAACGTTGGCCGGGAAAC 2780 Query 300 CTTAGTCTTTCGGCGAGGGGGTTTCCCACCC 330 ||| |||||||| | | ||||||| | ||| Sbjct 2779 CTTGATCTTTCGGTGGGCGGGTTTCTCGCCC 2749 >seq10422 Length=2666 Score = 91.5 bits (100), Expect = 3e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 253 CCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGG 312 ||||| | ||||||| |||||||||||||||||| |||||||||| |||| ||||| ||| Sbjct 461 CCTTAGGCCCCGACTGACCCTGATCCGATTAGCGTTGATCAGGAACCCTTGGTCTTCCGG 520 Query 313 CGAGGGGGTTTCCCACCC 330 | | ||||||| ||||| Sbjct 521 TGTGCGGGTTTCGCACCC 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959760739200