Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq8765 282 8e-74 seq10422 273 4e-71 seq8777 257 3e-66 seq16241 111 3e-22 seq20578 98.7 2e-18 >seq8765 Length=4561 Score = 282 bits (312), Expect = 8e-74 Identities = 266/334 (80%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| |||||| |||||| ||| |||||| ||| |||| ||||||||||||||||| Sbjct 1958 CCCGAACAGGGGAGTGAAAGAGAACCTGAAACCGTGCGCTTACAAGCGGTCGGAGCCACT 2017 Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 | |||||||||||||||||||||||||||||||||||||| | ||| || || Sbjct 2018 ACGTGTGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTT-GCCGTGCATGGCAAG 2076 Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183 |||||| | || || | || | |||||| ||||||||| || || |||||| |||| Sbjct 2077 GTTAAGCGTTTGAGACGCGGAA-CCGAAGCGAAAGCGAGTCTGAAGAGGGCGTTGAGTCA 2135 Query 184 -GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 || || ||||||||||| | ||||||||| || |||| |||||| ||| ||| Sbjct 2136 TGTAAGGC-AGACGCGAAACTTAGTGATCTACATGCGTCCAGGCTGAAGTTGCGCTAAAC 2194 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 || ||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||| | Sbjct 2195 CGCAATGGAGGGCCGAACCAGTAAACGTTGAAAAGTTTTTGGATGAGGTGCGTGTAGGAG 2254 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||||||| || ||||||||||| Sbjct 2255 TGAAAGGCCAATCAAACTGAGAGATAGCTCGTAC 2288 >seq10422 Length=2666 Score = 273 bits (302), Expect = 4e-71 Identities = 264/334 (79%), Gaps = 5/334 (1%) Strand=Plus/Minus Query 6 CGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTG 65 |||| || || |||||| |||||||||| ||| |||||| ||||||||||||||| | | Sbjct 1330 CGAGGAGCGGAGTGAAAGAGACCCTGAAACCGTGCGCCTGCAAGCGGTCGGAGCC-ACTT 1272 Query 66 ATTCG--GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123 || | |||||||||||||||||||||||||||||||||||| ||||| | ||||| Sbjct 1271 TTTAGTGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTCGCTCGTCGGCGGCGAG 1212 Query 124 GTTAAGGGCTTC-AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTT 182 | || || | |||| || | ||| || || |||||||| || |||||| |||| Sbjct 1211 GGGGAGCGCCTGGAGGCGCGG-ACCCGGAGCGAGAGCGAGCCCGAAGAGGGCGCGGAGTC 1153 Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242 | |||| |||||||||| ||| ||||||||| | ||||| ||||| ||| || || Sbjct 1152 GCCGGCGGCGGACGCGAAACTTTGCGATCTACCCCAGGGCAGGCTGAAGGCGCCGTGACA 1093 Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302 | | |||||| |||||||||| | |||||||||| ||||||| ||| ||||||||| Sbjct 1092 GGCGCTGGAGGGCCGAACCGGTGAGCGTTGAAAAGCTTTCGGACGACCTTGGGGTAGGGG 1033 Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||| ||| || ||||||||||| Sbjct 1032 TGAAAGGCCAATCAAGCTGAGAGATAGCTCGTAC 999 >seq8777 Length=4537 Score = 257 bits (284), Expect = 3e-66 Identities = 256/328 (78%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||| || ||||||| || ||||| |||||||||||||| | | Sbjct 3225 AGGGGAGTGAAACAGTCCCTGAAACCAGACGCCTTCAAGCGGTCGGAGCATCTTTTTGAT 3166 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 |||||||||||||||||||||||||| ||||||||||| | | || ||||||||||| Sbjct 3165 GTGACGGCGTGCCTTTTGCATAATGAACCTACGAGTTAC-CATGTCCGGCGAGGTTAAGT 3107 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG--ACGAGTTGGTGGC 188 || | || | ||| |||||||||||| || |||||| || | |||| || | Sbjct 3106 CTCTCTGAGACGCAA-CCGCAGTGAAAGCGAGGCTGAACAGGCCGTGATGAGTCGGATGG 3048 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 | ||||||||||||| ||||||||| || | |||| ||||||| ||||||| || ||| Sbjct 3047 GGTAGACGCGAAACCGAGTGATCTACACATGGCCAGGGTGAAGTCCCGGTAACACGGGAT 2988 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||| ||| ||| |||||||||| || |||||| | | | ||||| ||||||| Sbjct 2987 GGAGGCCCGCACCAATAAGCGTTGAAAAGCTTCTGGATGAGTTGTGTGTAGGAGTGAAAG 2928 Query 309 GCCAATCAAACTGGGAAATAGCTCGTAC 336 |||||||||||| ||| ||||||||||| Sbjct 2927 GCCAATCAAACTCGGAGATAGCTCGTAC 2900 >seq16241 Length=1089 Score = 111 bits (122), Expect = 3e-22 Identities = 186/260 (72%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCAC-CAGCGAGGTTAAGGGCTTCA 136 ||| | ||||| | || | || ||||||| ||| | ||||||||||||| || | Sbjct 238 CGTACTTTTTGTAGAACGGACCGGCGAGTTA--CGTTATGCAGCGAGGTTAAGAACTGAA 295 Query 137 GGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGG-TGGCGCTAGAC 195 || || |||||||| ||||||||| || || ||||||| ||||| || || ||||| Sbjct 296 GGTTCGG-AGCCGAAGCGAAAGCGAGTCTGAAGAGGGCGAT-AGTTGCATGACG-TAGAC 352 Query 196 GCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGAC 255 ||||||| |||| ||| ||| | ||||||||||| | |||| ||||||||| Sbjct 353 CCGAAACCGGGTGACCTATCCATGGCCAGGTTGAAGTGGGAGTAAAATCCCATGGAGGAC 412 Query 256 CGAACCGGTAAAC-GTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314 |||||| | | |||||||| |||||| | || |||||| |||| ||||| Sbjct 413 CGAACCAGACGTCTGTTGAAAAAGGCGGGGATGAGCTGTGGATAGGGGAGAAATTCCAAT 472 Query 315 CAAACTGGGAAATAGCTCGT 334 | ||| ||| |||||| || Sbjct 473 CGAACCCGGAGATAGCTGGT 492 >seq20578 Length=685 Score = 98.7 bits (108), Expect = 2e-18 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| ||||||| || |||||||||| | |||||| | | ||||||| |||||| Sbjct 1 TGGAGGCCCGAACCAGTTTCCGTTGAAAAGGGCTTGGATGAGTTGTGGGTAGGAGTGAAA 60 Query 308 GGCCAATCAAACTGGGAAATAGCTCGTAC 336 ||||||||||||||||| ||||||||||| Sbjct 61 GGCCAATCAAACTGGGAGATAGCTCGTAC 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972557549056