Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq8765 282 8e-74
seq10422 273 4e-71
seq8777 257 3e-66
seq16241 111 3e-22
seq20578 98.7 2e-18
>seq8765
Length=4561
Score = 282 bits (312), Expect = 8e-74
Identities = 266/334 (80%), Gaps = 4/334 (1%)
Strand=Plus/Plus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| |||||| |||||| ||| |||||| ||| |||| |||||||||||||||||
Sbjct 1958 CCCGAACAGGGGAGTGAAAGAGAACCTGAAACCGTGCGCTTACAAGCGGTCGGAGCCACT 2017
Query 64 TGATTCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
| |||||||||||||||||||||||||||||||||||||| | ||| || ||
Sbjct 2018 ACGTGTGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTT-GCCGTGCATGGCAAG 2076
Query 124 GTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTG 183
|||||| | || || | || | |||||| ||||||||| || || |||||| ||||
Sbjct 2077 GTTAAGCGTTTGAGACGCGGAA-CCGAAGCGAAAGCGAGTCTGAAGAGGGCGTTGAGTCA 2135
Query 184 -GTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242
|| || ||||||||||| | ||||||||| || |||| |||||| ||| |||
Sbjct 2136 TGTAAGGC-AGACGCGAAACTTAGTGATCTACATGCGTCCAGGCTGAAGTTGCGCTAAAC 2194
Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302
|| ||||||| ||||||| ||||||||||||||||||| |||||| ||| ||||| |
Sbjct 2195 CGCAATGGAGGGCCGAACCAGTAAACGTTGAAAAGTTTTTGGATGAGGTGCGTGTAGGAG 2254
Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
||||||||||||||||||| || |||||||||||
Sbjct 2255 TGAAAGGCCAATCAAACTGAGAGATAGCTCGTAC 2288
>seq10422
Length=2666
Score = 273 bits (302), Expect = 4e-71
Identities = 264/334 (79%), Gaps = 5/334 (1%)
Strand=Plus/Minus
Query 6 CGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTG 65
|||| || || |||||| |||||||||| ||| |||||| ||||||||||||||| | |
Sbjct 1330 CGAGGAGCGGAGTGAAAGAGACCCTGAAACCGTGCGCCTGCAAGCGGTCGGAGCC-ACTT 1272
Query 66 ATTCG--GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAG 123
|| | |||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 1271 TTTAGTGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTCGCTCGTCGGCGGCGAG 1212
Query 124 GTTAAGGGCTTC-AGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTT 182
| || || | |||| || | ||| || || |||||||| || |||||| ||||
Sbjct 1211 GGGGAGCGCCTGGAGGCGCGG-ACCCGGAGCGAGAGCGAGCCCGAAGAGGGCGCGGAGTC 1153
Query 183 GGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACG 242
| |||| |||||||||| ||| ||||||||| | ||||| ||||| ||| || ||
Sbjct 1152 GCCGGCGGCGGACGCGAAACTTTGCGATCTACCCCAGGGCAGGCTGAAGGCGCCGTGACA 1093
Query 243 CGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGG 302
| | |||||| |||||||||| | |||||||||| ||||||| ||| |||||||||
Sbjct 1092 GGCGCTGGAGGGCCGAACCGGTGAGCGTTGAAAAGCTTTCGGACGACCTTGGGGTAGGGG 1033
Query 303 TGAAAGGCCAATCAAACTGGGAAATAGCTCGTAC 336
||||||||||||||| ||| || |||||||||||
Sbjct 1032 TGAAAGGCCAATCAAGCTGAGAGATAGCTCGTAC 999
>seq8777
Length=4537
Score = 257 bits (284), Expect = 3e-66
Identities = 256/328 (78%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||| || ||||||| || ||||| |||||||||||||| | |
Sbjct 3225 AGGGGAGTGAAACAGTCCCTGAAACCAGACGCCTTCAAGCGGTCGGAGCATCTTTTTGAT 3166
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
|||||||||||||||||||||||||| ||||||||||| | | || |||||||||||
Sbjct 3165 GTGACGGCGTGCCTTTTGCATAATGAACCTACGAGTTAC-CATGTCCGGCGAGGTTAAGT 3107
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCG--ACGAGTTGGTGGC 188
|| | || | ||| |||||||||||| || |||||| || | |||| || |
Sbjct 3106 CTCTCTGAGACGCAA-CCGCAGTGAAAGCGAGGCTGAACAGGCCGTGATGAGTCGGATGG 3048
Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248
| ||||||||||||| ||||||||| || | |||| ||||||| ||||||| || |||
Sbjct 3047 GGTAGACGCGAAACCGAGTGATCTACACATGGCCAGGGTGAAGTCCCGGTAACACGGGAT 2988
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
||||| ||| ||| ||| |||||||||| || |||||| | | | ||||| |||||||
Sbjct 2987 GGAGGCCCGCACCAATAAGCGTTGAAAAGCTTCTGGATGAGTTGTGTGTAGGAGTGAAAG 2928
Query 309 GCCAATCAAACTGGGAAATAGCTCGTAC 336
|||||||||||| ||| |||||||||||
Sbjct 2927 GCCAATCAAACTCGGAGATAGCTCGTAC 2900
>seq16241
Length=1089
Score = 111 bits (122), Expect = 3e-22
Identities = 186/260 (72%), Gaps = 8/260 (3%)
Strand=Plus/Plus
Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCAC-CAGCGAGGTTAAGGGCTTCA 136
||| | ||||| | || | || ||||||| ||| | ||||||||||||| || |
Sbjct 238 CGTACTTTTTGTAGAACGGACCGGCGAGTTA--CGTTATGCAGCGAGGTTAAGAACTGAA 295
Query 137 GGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGG-TGGCGCTAGAC 195
|| || |||||||| ||||||||| || || ||||||| ||||| || || |||||
Sbjct 296 GGTTCGG-AGCCGAAGCGAAAGCGAGTCTGAAGAGGGCGAT-AGTTGCATGACG-TAGAC 352
Query 196 GCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGAC 255
||||||| |||| ||| ||| | ||||||||||| | |||| |||||||||
Sbjct 353 CCGAAACCGGGTGACCTATCCATGGCCAGGTTGAAGTGGGAGTAAAATCCCATGGAGGAC 412
Query 256 CGAACCGGTAAAC-GTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAAT 314
|||||| | | |||||||| |||||| | || |||||| |||| |||||
Sbjct 413 CGAACCAGACGTCTGTTGAAAAAGGCGGGGATGAGCTGTGGATAGGGGAGAAATTCCAAT 472
Query 315 CAAACTGGGAAATAGCTCGT 334
| ||| ||| |||||| ||
Sbjct 473 CGAACCCGGAGATAGCTGGT 492
>seq20578
Length=685
Score = 98.7 bits (108), Expect = 2e-18
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||||| ||||||| || |||||||||| | |||||| | | ||||||| ||||||
Sbjct 1 TGGAGGCCCGAACCAGTTTCCGTTGAAAAGGGCTTGGATGAGTTGTGGGTAGGAGTGAAA 60
Query 308 GGCCAATCAAACTGGGAAATAGCTCGTAC 336
||||||||||||||||| |||||||||||
Sbjct 61 GGCCAATCAAACTGGGAGATAGCTCGTAC 89
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972557549056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |