Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq15955 297 3e-78 >seq15955 Length=1132 Score = 297 bits (328), Expect = 3e-78 Identities = 214/241 (89%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| | Sbjct 483 GTACAAAGGGCAGGGACGTAATCAACGCGAG-TTGATGACTCACGCTTACTAGGAATT-C 426 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| ||| |||| |||||||| | ||||||||| ||||||||| ||||||| |||| Sbjct 425 CTCGTTTAAGTCCAAAAATTGCAAGGGACTATCCCCAGCACGATGAAGTTTCAAAAGATT 366 Query 120 ACCCGGACCTGTCGGCCAAGGTGAT-AGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||||||| || ||||| || | ||||||||| | |||||||||||||||||||| Sbjct 365 ACCCGGACCTTCCGATCAAGG--ATGAAACTCGTTGACTTCATCAGTGTAGCGCGCGTGC 308 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 307 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGATTAAA 248 Query 239 A 239 | Sbjct 247 A 247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751818435945