Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq15955 352 5e-95 >seq15955 Length=1132 Score = 352 bits (390), Expect = 5e-95 Identities = 244/274 (89%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104 |||| || |||| | || || | ||||||||||||||||||||||||||||||| ||||| Sbjct 659 TTCATTGTGTGTACTGGCGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGC 718 Query 105 AGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164 |||| | |||| |||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 719 AGGCTTATGCTTGAATACATTAGCATGGAATAATAGAATAGGACTTT-GGTTCTATTTTG 777 Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224 |||||||||||||||| ||||||||||||||||||||| ||||| | |||||| |||| Sbjct 778 TTGGTTTCTAGGACCGAAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATT 837 Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284 |||||||||||||||||| ||||||| |||||||||| |||||||||| || |||||| Sbjct 838 GTCAGAGGTGAAATTCTTAGATTTATGAAAGACTAACTTCTGCGAAAGCATTTGCCAAGG 897 Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||| |||||||||||||||| Sbjct 898 ATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914971904704