Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq15955 352 5e-95
>seq15955
Length=1132
Score = 352 bits (390), Expect = 5e-95
Identities = 244/274 (89%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 45 TTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGC 104
|||| || |||| | || || | ||||||||||||||||||||||||||||||| |||||
Sbjct 659 TTCATTGTGTGTACTGGCGATCTAGGACTTTTACTTTGAAAAAATTAGAGTGTTTAAAGC 718
Query 105 AGGCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG 164
|||| | |||| |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 719 AGGCTTATGCTTGAATACATTAGCATGGAATAATAGAATAGGACTTT-GGTTCTATTTTG 777
Query 165 TTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATT 224
|||||||||||||||| ||||||||||||||||||||| ||||| | |||||| ||||
Sbjct 778 TTGGTTTCTAGGACCGAAGTAATGATTAATAGGGATAGTTGGGGGCATTAGTATTTAATT 837
Query 225 GTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG 284
|||||||||||||||||| ||||||| |||||||||| |||||||||| || ||||||
Sbjct 838 GTCAGAGGTGAAATTCTTAGATTTATGAAAGACTAACTTCTGCGAAAGCATTTGCCAAGG 897
Query 285 ATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|||||||||||||||| ||||||||||||||||
Sbjct 898 ATGTTTTCATTAATCA-AGAACGAAAGTTAGGGG 930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914971904704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |