Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq652 145 3e-32 seq344 111 7e-22 >seq652 Length=66343 Score = 145 bits (160), Expect = 3e-32 Identities = 110/130 (85%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| |||||||||||||||||||||||||||| ||| |||| |||| Sbjct 31927 AGAGCGTACAGGTTGCGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGTCAGA 31986 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||||| | || | |||||||| ||||||||||||||| | | |||||| Sbjct 31987 GGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGT 32046 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 32047 ATAGGGGCGA 32056 >seq344 Length=84033 Score = 111 bits (122), Expect = 7e-22 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||| ||| | |||||||| || |||| | |||| ||| |||| ||||||| Sbjct 7301 GAGTCGAGTTGCTTGAAAGTGCAGCTCAAAGTGGGTGATAAACTTCACCTAAGGCTAAAT 7242 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || ||| || ||||| ||| | ||| |||| ||||| || |||| |||||| | Sbjct 7241 ATAGGCGCGAATTCGATA--GCAAACGTACTGTGAAGGAAAGTTGCAAAGAACTTTGAAG 7184 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| | ||||||||| |||| | |||| || Sbjct 7183 AGAGAGTTTAAATGAACGTGAAATCGTTGGAGTGGAACCG 7144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079465401650