Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq23756 127 2e-27 seq8765 127 2e-27 seq8777 113 4e-23 >seq23756 Length=540 Score = 127 bits (140), Expect = 2e-27 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||| ||| ||| |||||||||||||||||||||||||||| Sbjct 51 GGTGGATGCCTTGGCACTAAGAGCCGATGAAAGACGTGATAAGCTGCGAAAAGCTACGGG 110 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCG 115 || ||| ||| | ||||||||||||||||| |||||||| |||||| Sbjct 111 GAGCTGCAAATAAGCATTGATCCGTAGATATCTGAATGGGGAAACCCG 158 >seq8765 Length=4561 Score = 127 bits (140), Expect = 2e-27 Identities = 135/176 (77%), Gaps = 8/176 (5%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 || ||||||| ||||||| ||||||||||||||||||||||||||||| ||||| |||| Sbjct 1471 GGGGGATGCCCTGGCTCTCAGAGGCGAAGAAGGACGTGATAAGCTGCGATAAGCTCCGGG 1530 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGAGA 127 || ||| ||| |||||||| ||| |||||||||| |||||||| | ||| Sbjct 1531 GAGGTGCAAATAACCTTTGATCCGGGGATTTCCGAATGGGACAACCCGACA----CGAGC 1586 Query 128 TATATCATAACGC---TAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 || | || | || | | |||||||| |||||||||||||||||||||| Sbjct 1587 GATCGTGTCACCCTCTTACGAG-GGGGCGAACGCGGGGAACTGAAACATCTAAGTA 1641 >seq8777 Length=4537 Score = 113 bits (124), Expect = 4e-23 Identities = 136/180 (76%), Gaps = 9/180 (5%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||| Sbjct 3961 GGTGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGATAAGC-GCGGG 3903 Query 68 GATTGGCACATACGA--ATTGATCCGTAGATATCCGAATGGGGCAACC---CGATATATT 122 | | || || | || ||||||| ||| |||||||||| ||||| | | | Sbjct 3902 G-TAGGTGCAAATGACCCTTGATCCCGCGATTTCCGAATGGGACAACCCAGCAGTCTGAA 3844 Query 123 GGAGATATATCATAACGCT--AGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 ||| ||||| ||| | | || ||||||||| |||||||||||||||| |||| Sbjct 3843 GGACTGTTATCACCACGTTGCTGTGGTGAGGCGAACGCAGGGAACTGAAACATCTTAGTA 3784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476684880663