Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq20041 273 6e-71 seq19390 269 7e-70 seq8765 268 2e-69 seq13431 125 2e-26 >seq20041 Length=719 Score = 273 bits (302), Expect = 6e-71 Identities = 298/395 (75%), Gaps = 2/395 (1%) Strand=Plus/Plus Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 109 AAGCACCGGCAAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTGTTCG 168 Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134 |||| ||||||||||||| | ||| |||||| | ||| ||| |||||| ||| Sbjct 169 GAATCACTGGGCGTAAAGGGAGCGTAGGCGGAGATTCAAGCGGATTGTACAATCCCGGGG 228 Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194 | |||| ||| |||| | |||| | || | | |||| || || ||||| Sbjct 229 CCCAACCCCGGACCTGCAGTCCGAACTGGATTTCTTGGATAGTTCAGGGGCAGGCGGAAT 288 Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254 ||| ||||||| ||| |||||||||| || ||| ||||||| ||||||||||||||| Sbjct 289 TCCTGGTGTAGCGGTGGAATGCGTAGAGATCAGGAAGAACACCGATGGCGAAGGCAGCCT 348 Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314 ||||| || |||||| | || |||||| | ||| ||||||||||||||||||||| Sbjct 349 GCTGGGGACTCATCGACGCTGAGGCTCGAAAGTGCGGGTAGCAAACAGGATTAGATACCC 408 Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGGTAACG 374 ||||||||| | || |||||||| ||| | ||| ||| || | || |||| || Sbjct 409 TGGTAGTCCGCACCGTAAACGATGCATACTGGGTGTCCGGGGTT--CGCCCCGGGTACCG 466 Query 375 TAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| ||||||| |||| ||||||||||| ||| Sbjct 467 AAGCCAACGCGTTAAGTATGCCGCCTGGGGAGTAC 501 >seq19390 Length=764 Score = 269 bits (298), Expect = 7e-70 Identities = 240/299 (80%), Gaps = 1/299 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||| | |||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 467 TACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGC 526 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||| |||||||| |||||| | ||| |||||| || ||| ||| ||| Sbjct 527 AAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGTAGGCGGGA-TGCAAGTCAGATGT 585 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||||| ||||| ||| |||| |||||||| |||| || ||||| ||| Sbjct 586 GAAATCCCTGGGCTCAACTCCGGAACTGCATTTGAAACTGTTTTTCTTGAGTGCTGGAGA 645 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||| ||||||| ||||||||||||||||| |||||||||||| ||| Sbjct 646 GGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 705 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||| || |||| | ||||||||| | || ||||||||||||||||||||| Sbjct 706 CGAAGGCGGCTTACTGGACTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA 764 >seq8765 Length=4561 Score = 268 bits (296), Expect = 2e-69 Identities = 306/403 (76%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||| | ||||||||| |||||||||||||||||||||||| ||| | ||||||||| Sbjct 179 GAATAAGTATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATACAAGCGTTA 238 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| |||||||||||| |||| |||| |||||| Sbjct 239 TCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACCGTTAAGTCAGGGGTGAAAAGTT 298 Query 131 CGGGCTTAACCTGGGAAT--TGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGG 188 ||||| ||| ||| ||| ||| |||| |||||||||| | || | || Sbjct 299 GGGGCTCAACTCC--AATCGTGCCCTTGATACTGGCGGACTAGAGTGCGATAGGCGTGGC 356 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||| | ||||||| ||||||||| ||||||||| ||||||| || | |||| Sbjct 357 CGGAATGTGATGTGTAGCGGTGAAATGCTTAGATATGTCACAGAACACCGATCGAGAAGT 416 Query 249 CAGCCCCCTGGGATAACA-CTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307 ||| | | | | | || |||||||||||||||||||||||||||| |||||||||||| Sbjct 417 CAGGTCAC-GAGTTCGCAACTGACGCTCATGCACGAAAGCGTGGGGATCAAACAGGATTA 475 Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT-ATCAACTAGTTGTTGGGGATTTACTTCCT 366 ||||||||||||||||||||| |||||||| ||| ||| ||||| |||| || ||| Sbjct 476 GATACCCTGGTAGTCCACGCCGTAAACGATGATC-ACTCGTTGTCGGGGGGCGAC--CCT 532 Query 367 TGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| | ||| || ||| |||| || |||||||| ||| Sbjct 533 CGGTGGCCAAGCGAAAGCGATAAGTGATCCACCTGGGGAGTAC 575 >seq13431 Length=1516 Score = 125 bits (138), Expect = 2e-26 Identities = 225/325 (69%), Gaps = 3/325 (1%) Strand=Plus/Plus Query 32 GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 91 |||||||| |||||||||| || | | || | || | ||| ||||| |||| Sbjct 458 GTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCTGTTTTTATTGGGCCTAAA 517 Query 92 GCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACC-TGGGAATTG 150 |||| || || ||||| |||| || ||||||||| ||||||| ||||||||| Sbjct 518 GCGTTCGTAGCCGGTTTGATAAGTCACTGGTGAAATCCTGTAGCTTAACTGTGGGAATTG 577 Query 151 CATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTG 210 | || |||| ||| ||| | ||||| | || | ||| | |||| ||| Sbjct 578 CTGGTGATACTGTTGAACTTGAGGTCGGGAGAGGTTAGCGGTACTCCCAGGGTAGAGGTG 637 Query 211 AAATGC-GTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTG 269 |||| | ||| || |||||| |||| |||||||||| || |||| | | ||| Sbjct 638 AAATTCTGTAATCCTG-GGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGAACCTG 696 Query 270 ACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCC 329 ||| | | | |||||||| |||| || ||| ||||||||||||| |||||||| ||| Sbjct 697 ACGGTGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCCG 756 Query 330 TAAACGATATCAACTAGTTGTTGGG 354 |||||||| ||| | ||||||| Sbjct 757 TAAACGATGCGGACTTGGTGTTGGG 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289278592992