Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq20041 273 6e-71
seq19390 269 7e-70
seq8765 268 2e-69
seq13431 125 2e-26
>seq20041
Length=719
Score = 273 bits (302), Expect = 6e-71
Identities = 298/395 (75%), Gaps = 2/395 (1%)
Strand=Plus/Plus
Query 15 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 74
|||||||||| |||| |||||||||||||||||||||||| ||||||||||||| |||
Sbjct 109 AAGCACCGGCAAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTGTTCG 168
Query 75 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGG 134
|||| ||||||||||||| | ||| |||||| | ||| ||| |||||| |||
Sbjct 169 GAATCACTGGGCGTAAAGGGAGCGTAGGCGGAGATTCAAGCGGATTGTACAATCCCGGGG 228
Query 135 CTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAAT 194
| |||| ||| |||| | |||| | || | | |||| || || |||||
Sbjct 229 CCCAACCCCGGACCTGCAGTCCGAACTGGATTTCTTGGATAGTTCAGGGGCAGGCGGAAT 288
Query 195 TCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCC 254
||| ||||||| ||| |||||||||| || ||| ||||||| |||||||||||||||
Sbjct 289 TCCTGGTGTAGCGGTGGAATGCGTAGAGATCAGGAAGAACACCGATGGCGAAGGCAGCCT 348
Query 255 CCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 314
||||| || |||||| | || |||||| | ||| |||||||||||||||||||||
Sbjct 349 GCTGGGGACTCATCGACGCTGAGGCTCGAAAGTGCGGGTAGCAAACAGGATTAGATACCC 408
Query 315 TGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTGGTAACG 374
||||||||| | || |||||||| ||| | ||| ||| || | || |||| ||
Sbjct 409 TGGTAGTCCGCACCGTAAACGATGCATACTGGGTGTCCGGGGTT--CGCCCCGGGTACCG 466
Query 375 TAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
||| ||||||| |||| ||||||||||| |||
Sbjct 467 AAGCCAACGCGTTAAGTATGCCGCCTGGGGAGTAC 501
>seq19390
Length=764
Score = 269 bits (298), Expect = 7e-70
Identities = 240/299 (80%), Gaps = 1/299 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
||||| | |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 467 TACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGC 526
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||| |||||||| |||||| | ||| |||||| || ||| ||| |||
Sbjct 527 AAGCGTTATCCGGATTTACTGGGTGTAAAGGGCGCGTAGGCGGGA-TGCAAGTCAGATGT 585
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
|||||||| ||||| ||| |||| |||||||| |||| || ||||| |||
Sbjct 586 GAAATCCCTGGGCTCAACTCCGGAACTGCATTTGAAACTGTTTTTCTTGAGTGCTGGAGA 645
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||||| ||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 646 GGTAAGCGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 705
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301
||||||| || |||| | ||||||||| | || |||||||||||||||||||||
Sbjct 706 CGAAGGCGGCTTACTGGACTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA 764
>seq8765
Length=4561
Score = 268 bits (296), Expect = 2e-69
Identities = 306/403 (76%), Gaps = 10/403 (2%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||| | ||||||||| |||||||||||||||||||||||| ||| | |||||||||
Sbjct 179 GAATAAGTATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATACAAGCGTTA 238
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|||| ||| |||| ||||| |||||||||||| |||| |||| ||||||
Sbjct 239 TCCGGATTTATTGGGTTTAAAGGGTGCGCAGGCGGACCGTTAAGTCAGGGGTGAAAAGTT 298
Query 131 CGGGCTTAACCTGGGAAT--TGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGG 188
||||| ||| ||| ||| ||| |||| |||||||||| | || | ||
Sbjct 299 GGGGCTCAACTCC--AATCGTGCCCTTGATACTGGCGGACTAGAGTGCGATAGGCGTGGC 356
Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248
||||| | ||||||| ||||||||| ||||||||| ||||||| || | ||||
Sbjct 357 CGGAATGTGATGTGTAGCGGTGAAATGCTTAGATATGTCACAGAACACCGATCGAGAAGT 416
Query 249 CAGCCCCCTGGGATAACA-CTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTA 307
||| | | | | | || |||||||||||||||||||||||||||| ||||||||||||
Sbjct 417 CAGGTCAC-GAGTTCGCAACTGACGCTCATGCACGAAAGCGTGGGGATCAAACAGGATTA 475
Query 308 GATACCCTGGTAGTCCACGCCCTAAACGAT-ATCAACTAGTTGTTGGGGATTTACTTCCT 366
||||||||||||||||||||| |||||||| ||| ||| ||||| |||| || |||
Sbjct 476 GATACCCTGGTAGTCCACGCCGTAAACGATGATC-ACTCGTTGTCGGGGGGCGAC--CCT 532
Query 367 TGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
||| | ||| || ||| |||| || |||||||| |||
Sbjct 533 CGGTGGCCAAGCGAAAGCGATAAGTGATCCACCTGGGGAGTAC 575
>seq13431
Length=1516
Score = 125 bits (138), Expect = 2e-26
Identities = 225/325 (69%), Gaps = 3/325 (1%)
Strand=Plus/Plus
Query 32 GTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAA 91
|||||||| |||||||||| || | | || | || | ||| ||||| ||||
Sbjct 458 GTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCTGTTTTTATTGGGCCTAAA 517
Query 92 GCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACC-TGGGAATTG 150
|||| || || ||||| |||| || ||||||||| ||||||| |||||||||
Sbjct 518 GCGTTCGTAGCCGGTTTGATAAGTCACTGGTGAAATCCTGTAGCTTAACTGTGGGAATTG 577
Query 151 CATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTG 210
| || |||| ||| ||| | ||||| | || | ||| | |||| |||
Sbjct 578 CTGGTGATACTGTTGAACTTGAGGTCGGGAGAGGTTAGCGGTACTCCCAGGGTAGAGGTG 637
Query 211 AAATGC-GTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTG 269
|||| | ||| || |||||| |||| |||||||||| || |||| | | |||
Sbjct 638 AAATTCTGTAATCCTG-GGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGAACCTG 696
Query 270 ACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCC 329
||| | | | |||||||| |||| || ||| ||||||||||||| |||||||| |||
Sbjct 697 ACGGTGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCCG 756
Query 330 TAAACGATATCAACTAGTTGTTGGG 354
|||||||| ||| | |||||||
Sbjct 757 TAAACGATGCGGACTTGGTGTTGGG 781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289278592992
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