Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq8765 127 3e-27 seq18192 114 2e-23 seq10422 73.4 5e-11 >seq8765 Length=4561 Score = 127 bits (140), Expect = 3e-27 Identities = 175/248 (71%), Gaps = 24/248 (10%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||| ||||| || ||||| || ||| | |||||| Sbjct 3305 CTTAACCTTCCGGCACTGGGCAGGTGTCAGGCCTTATACTTCATGTTATCCATTTCGCAA 3246 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | | ||||||||| |||||||||||| | | |||||||||| || |||| Sbjct 3245 AGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCGATTCTCTGCGCCC-------GCTC- 3194 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | || ||| ||||||||||||||| |||| |||||||| | Sbjct 3193 ---------------GC-GCGGGGCCCTTTCTCCCGAAGTTACAGGGCAATTTTGCCTAG 3150 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| ||| |||| ||| | |||||| ||||||| | || ||||||||||||| Sbjct 3149 TTCCTTAGCCATGAATCACTCGAGCACCTTAGAATTCTCTTCTCGATCACCTGTGTCGGT 3090 Query 241 TTACGGTA 248 |||| ||| Sbjct 3089 TTACAGTA 3082 >seq18192 Length=863 Score = 114 bits (126), Expect = 2e-23 Identities = 143/196 (73%), Gaps = 24/196 (12%) Strand=Plus/Minus Query 54 TTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCAC 113 || ||| ||||||||||||| ||||||||| |||| |||||||||||| || | Sbjct 861 TTAGCAGAGACCTGTGTTTTTGGTAAACAGTTGCTTGGGCCTATTCTCTGCGGCCGGC-- 804 Query 114 CAGCTCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 ||| | || ||| |||||| |||||||||||||||| || || Sbjct 803 ----------CGTGG----CC------GGCTCCCCTTATCCCGAAGTTACGGGGTCAATT 764 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCT 232 |||||| ||||||||| || ||| |||| ||||||| ||||||| ||| | | |||| Sbjct 763 TGCCGAGTTCCTTAACAACCCTTCTCCCGTTGGCCTTAGGATTCTCT-CCTCATCTACCT 705 Query 233 GTGTCGGTTTACGGTA 248 |||||||||| ||||| Sbjct 704 GTGTCGGTTTGCGGTA 689 >seq10422 Length=2666 Score = 73.4 bits (80), Expect = 5e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 144 ACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGA 203 |||| ||||||||||||||| ||| | |||||| | |||||| | |||| ||| Sbjct 95 ACCCTTTCTCCCGAAGTTACAGGGTAAATTTGCCTAGTTCCTTGGCTGTGACTCACTCGA 154 Query 204 ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| | || |||| | |||||||||||||||| | ||||| Sbjct 155 GCACCTTTGGATACTCTCCTCGACCACCTGTGTCGGTCTCCGGTA 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694232342979