Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq8765 127 3e-27
seq18192 114 2e-23
seq10422 73.4 5e-11
>seq8765
Length=4561
Score = 127 bits (140), Expect = 3e-27
Identities = 175/248 (71%), Gaps = 24/248 (10%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||| ||||| || ||||| || ||| | ||||||
Sbjct 3305 CTTAACCTTCCGGCACTGGGCAGGTGTCAGGCCTTATACTTCATGTTATCCATTTCGCAA 3246
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
| | ||||||||| |||||||||||| | | |||||||||| || ||||
Sbjct 3245 AGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCGATTCTCTGCGCCC-------GCTC- 3194
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
|| | || ||| ||||||||||||||| |||| |||||||| |
Sbjct 3193 ---------------GC-GCGGGGCCCTTTCTCCCGAAGTTACAGGGCAATTTTGCCTAG 3150
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| ||| |||| ||| | |||||| ||||||| | || |||||||||||||
Sbjct 3149 TTCCTTAGCCATGAATCACTCGAGCACCTTAGAATTCTCTTCTCGATCACCTGTGTCGGT 3090
Query 241 TTACGGTA 248
|||| |||
Sbjct 3089 TTACAGTA 3082
>seq18192
Length=863
Score = 114 bits (126), Expect = 2e-23
Identities = 143/196 (73%), Gaps = 24/196 (12%)
Strand=Plus/Minus
Query 54 TTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCAC 113
|| ||| ||||||||||||| ||||||||| |||| |||||||||||| || |
Sbjct 861 TTAGCAGAGACCTGTGTTTTTGGTAAACAGTTGCTTGGGCCTATTCTCTGCGGCCGGC-- 804
Query 114 CAGCTCAACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173
||| | || ||| |||||| |||||||||||||||| || ||
Sbjct 803 ----------CGTGG----CC------GGCTCCCCTTATCCCGAAGTTACGGGGTCAATT 764
Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACC-ACCT 232
|||||| ||||||||| || ||| |||| ||||||| ||||||| ||| | | ||||
Sbjct 763 TGCCGAGTTCCTTAACAACCCTTCTCCCGTTGGCCTTAGGATTCTCT-CCTCATCTACCT 705
Query 233 GTGTCGGTTTACGGTA 248
|||||||||| |||||
Sbjct 704 GTGTCGGTTTGCGGTA 689
>seq10422
Length=2666
Score = 73.4 bits (80), Expect = 5e-11
Identities = 79/105 (75%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 144 ACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGA 203
|||| ||||||||||||||| ||| | |||||| | |||||| | |||| |||
Sbjct 95 ACCCTTTCTCCCGAAGTTACAGGGTAAATTTGCCTAGTTCCTTGGCTGTGACTCACTCGA 154
Query 204 ACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
| |||| | || |||| | |||||||||||||||| | |||||
Sbjct 155 GCACCTTTGGATACTCTCCTCGACCACCTGTGTCGGTCTCCGGTA 199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694232342979
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |