Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq10422 140 3e-31
seq8765 136 4e-30
seq18192 118 1e-24
>seq10422
Length=2666
Score = 140 bits (154), Expect = 3e-31
Identities = 135/170 (79%), Gaps = 5/170 (3%)
Strand=Plus/Minus
Query 27 ACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAA 86
|| |||||| || |||| | || ||| | |||| ||| |||||| |||| | ||||||
Sbjct 191 ACCGACACAGGTGGTCGAGGAGAGTATCCAAAGGTGCTCGAGTGAGTCACAGCCAAGGAA 132
Query 87 CTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCG 146
||||||||| | ||||||||||||||||| ||||||||| | | || | || ||||
Sbjct 131 CTAGGCAAATTTACCCTGTAACTTCGGGAGAAAGGGTCC--TCGCGTAA--GCGA-GGCG 77
Query 147 CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||||||| || || ||| |||||||||||||||||||||||| ||| ||
Sbjct 76 CAGAGAAATGGCCCGGGCGACTGTTTAACAAAAACACAGGGCTATGCGAA 27
>seq8765
Length=4561
Score = 136 bits (150), Expect = 4e-30
Identities = 133/172 (77%), Gaps = 7/172 (4%)
Strand=Plus/Plus
Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84
|||| |||||| || ||| | || || |||||| ||| |||||| ||| || |||||
Sbjct 3088 AAACCGACACAGGTGATCGAGAAGAGAATTCTAAGGTGCTCGAGTGATTCATGGCTAAGG 3147
Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGG 144
||||||||||| | |||||||||||||||| |||||| ||| | | | |||
Sbjct 3148 AACTAGGCAAAATTGCCCTGTAACTTCGGGAGAAAGGGCCCCGCGC-------GAGCGGG 3200
Query 145 CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
|||||||||| || |||||| |||||||| |||||||||| |||| ||| ||
Sbjct 3201 CGCAGAGAATCGGCCCAGGCGACTGTTTACCAAAAACACATGGCTTTGCGAA 3252
>seq18192
Length=863
Score = 118 bits (130), Expect = 1e-24
Identities = 131/175 (75%), Gaps = 5/175 (3%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
||||||| |||||| |||| | | || || ||||||| | | ||| ||||
Sbjct 692 CGCAAACCGACACAGGTAGATGAGGAGAGAATCCTAAGGCCAACGGGAGAAGGGTTGTTA 751
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||||| |||||| |||||| ||||||||||||||| ||| || || | ||
Sbjct 752 AGGAACTCGGCAAATTGACCCCGTAACTTCGGGATAAGGGGAGCCGGCC-----ACGGCC 806
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
|| ||||||||||||| ||| ||||||||||| |||||||||||| || ||| ||
Sbjct 807 GGCCGCAGAGAATAGGCCCAAGCAACTGTTTACCAAAAACACAGGTCTCTGCTAA 861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531071746242
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |