Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq10422 140 3e-31 seq8765 136 4e-30 seq18192 118 1e-24 >seq10422 Length=2666 Score = 140 bits (154), Expect = 3e-31 Identities = 135/170 (79%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 27 ACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGGAA 86 || |||||| || |||| | || ||| | |||| ||| |||||| |||| | |||||| Sbjct 191 ACCGACACAGGTGGTCGAGGAGAGTATCCAAAGGTGCTCGAGTGAGTCACAGCCAAGGAA 132 Query 87 CTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCG 146 ||||||||| | ||||||||||||||||| ||||||||| | | || | || |||| Sbjct 131 CTAGGCAAATTTACCCTGTAACTTCGGGAGAAAGGGTCC--TCGCGTAA--GCGA-GGCG 77 Query 147 CAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||||| || || ||| |||||||||||||||||||||||| ||| || Sbjct 76 CAGAGAAATGGCCCGGGCGACTGTTTAACAAAAACACAGGGCTATGCGAA 27 >seq8765 Length=4561 Score = 136 bits (150), Expect = 4e-30 Identities = 133/172 (77%), Gaps = 7/172 (4%) Strand=Plus/Plus Query 25 AAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAGG 84 |||| |||||| || ||| | || || |||||| ||| |||||| ||| || ||||| Sbjct 3088 AAACCGACACAGGTGATCGAGAAGAGAATTCTAAGGTGCTCGAGTGATTCATGGCTAAGG 3147 Query 85 AACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGG 144 ||||||||||| | |||||||||||||||| |||||| ||| | | | ||| Sbjct 3148 AACTAGGCAAAATTGCCCTGTAACTTCGGGAGAAAGGGCCCCGCGC-------GAGCGGG 3200 Query 145 CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 |||||||||| || |||||| |||||||| |||||||||| |||| ||| || Sbjct 3201 CGCAGAGAATCGGCCCAGGCGACTGTTTACCAAAAACACATGGCTTTGCGAA 3252 >seq18192 Length=863 Score = 118 bits (130), Expect = 1e-24 Identities = 131/175 (75%), Gaps = 5/175 (3%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| |||| | | || || ||||||| | | ||| |||| Sbjct 692 CGCAAACCGACACAGGTAGATGAGGAGAGAATCCTAAGGCCAACGGGAGAAGGGTTGTTA 751 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| |||||| ||||||||||||||| ||| || || | || Sbjct 752 AGGAACTCGGCAAATTGACCCCGTAACTTCGGGATAAGGGGAGCCGGCC-----ACGGCC 806 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 || ||||||||||||| ||| ||||||||||| |||||||||||| || ||| || Sbjct 807 GGCCGCAGAGAATAGGCCCAAGCAACTGTTTACCAAAAACACAGGTCTCTGCTAA 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531071746242