Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq8765 356 5e-96 seq8777 185 2e-44 seq18192 154 3e-35 seq10422 109 1e-21 >seq8765 Length=4561 Score = 356 bits (394), Expect = 5e-96 Identities = 290/350 (83%), Gaps = 4/350 (1%) Strand=Plus/Minus Query 4 CCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATC 63 |||||||||||||||| | ||||||||||||||| || | |||||||||||||| ||| Sbjct 3489 CCGGCATCTTCACCGGCACTACAATTTCACCGAGCTCATGGCTGAGACAGTGCCCAGATC 3430 Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123 ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3429 GTTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 3370 Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGA 183 ||||||||||||||||||||||| ||||||| | |||| |||||| |||| | ||| Sbjct 3369 TTATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCAATGCTTCTCTTGCGATGACATC 3310 Query 184 TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTT-GCGACTTA 242 ||| ||||||||||| |||| ||||||| ||||| | ||||| || | || | | || Sbjct 3309 TCCTCTTAACCTTCCGGCACTGGGCAGGTGTCAGGCCTTATACTTCATGTTATCCATTTC 3250 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 ||| | | |||||||||||||||||||||| |||||| |||||||||| || || | Sbjct 3249 GCAAAGCCATGTGTTTTTGGTAAACAGTCGCCTGGGCCGATTCTCTGCGCCCGCTC---G 3193 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 || ||| ||||||| ||||||| ||| |||||||| ||||||||| Sbjct 3192 CGCGGGGCCCTTTCTCCCGAAGTTACAGGGCAATTTTGCCTAGTTCCTTA 3143 >seq8777 Length=4537 Score = 185 bits (204), Expect = 2e-44 Identities = 135/157 (86%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | ||||||||||| ||| | |||||||| | || ||| Sbjct 1867 CGGCATCTTCACCGATACTACAATTTCACTGAGCTCGCGGCTGAGACAGCGTCCGGATCA 1926 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1927 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 1986 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCA 161 |||||||||||||||||||||| ||||||| | |||| Sbjct 1987 TATAGTTACGGCCGCCGTTTACCGGGGCTTCAATTCA 2023 >seq18192 Length=863 Score = 154 bits (170), Expect = 3e-35 Identities = 110/125 (88%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 240 TTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCA 299 |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 861 TTAGCAGAGACCTGTGTTTTTGGTAAACAGTTGCTTGGGCCTATTCTCTGCGGCCGGCCG 802 Query 300 TAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAG 359 | | | ||| |||||| |||| |||||||||||||| |||||||||||||||||||| Sbjct 801 T-GGCCGGCTCCCCTTATCCCGAAGTTACGGGGTCAATTTGCCGAGTTCCTTAACAACCC 743 Query 360 TTCTC 364 ||||| Sbjct 742 TTCTC 738 >seq10422 Length=2666 Score = 109 bits (120), Expect = 1e-21 Identities = 103/130 (79%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 222 TATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 ||||| ||| |||||| ||| ||| | |||||||||||| ||||||||||| ||||| Sbjct 9 TATACCTCGCCTTGCGGCTTCGCATAGCCCTGTGTTTTTGTTAAACAGTCGCCCGGGCCA 68 Query 282 ATTCTCTGCGGCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGC 341 |||||||| |||| | || | | |||| ||||||| ||||||| |||| | ||||| Sbjct 69 TTTCTCTGC-GCCTCGCTTACGCGAGGACCCTTTCTCCCGAAGTTACAGGGTAAATTTGC 127 Query 342 CGAGTTCCTT 351 | |||||||| Sbjct 128 CTAGTTCCTT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062135218048