Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq8765 387 4e-105 seq20041 203 1e-49 seq13431 145 2e-32 >seq8765 Length=4561 Score = 387 bits (428), Expect = 4e-105 Identities = 393/501 (78%), Gaps = 12/501 (2%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| Sbjct 573 TACGATCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAGCAT 632 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||||||||| ||||| | | |||| Sbjct 633 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAA--CGTAAGACCGAGA 690 Query 121 TAGAGATAGAG-GTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179 | || ||| | || |||||||||| || ||||| |||||||||||||||| Sbjct 691 TGCAGG-AGACTGCATCGCCTTCGGGGGTTT---TGCGAGGTGCTGCATGGTTGTCGTCA 746 Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 ||||||| |||||| |||| |||||||||| ||||||||||||||||||| | ||||| Sbjct 747 GCTCGTGCCGTGAGGTGTTAGGTTAAGTCCTGCAACGAGCGCAACCCTTACCTTCAGTTG 806 Query 240 CCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGG 296 ||| || ||| | |||| ||||| |||||| | ||| | ||||||||||| Sbjct 807 CCAGCACGTAATGGTGGGGACTCTGGAGGAACTGCCTACG-CAAGTAGAGAGGAAGGTGG 865 Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356 ||| |||||||||||| || | |||||||| ||||||||||||||||||||||| Sbjct 866 GGATGACGTCAAATCAGCACGGCCCTTATGTCCGGGGCTACACACGTGCTACAATGGCGC 925 Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416 | ||| |||||||||| |||||||| ||| ||||| ||||| ||||||||||| Sbjct 926 ACACAGAGGGCAGCGACCCCGCGAGGGGGAGCCAATCCATGAAAGTGCGTCTCAGTTCGG 985 Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475 || | |||||| ||| ||||| ||||| |||| ||||||||||||| ||||| ||| Sbjct 986 ATCGGAGTCTGGAACCCGACTCCGTGAAGTTGGATTCGCTAGTAATCGCGCATCAGCCAT 1045 Query 476 GCTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| Sbjct 1046 GACGCGGTGAATACGTTCCCG 1066 >seq20041 Length=719 Score = 203 bits (224), Expect = 1e-49 Identities = 179/221 (81%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 499 TACGTACGCAAGTATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 558 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCT 119 ||||||||||||||||||||||| |||||||||||| ||||||| | | | Sbjct 559 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGGGTTTGACATGGGAACGCCGCGG 618 Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG-ACAGGTGATGCATGGTTGTCGTC 178 | |||||| | |||| | | || | ||||||| ||||||| ||||||| Sbjct 619 CGAGAGATCGCCGTTTTGCAGCAATGCAACGTTCCGCACAGGTGCTGCATGGCTGTCGTC 678 Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219 ||||||||||||||||||||||||||||||||||||||||| Sbjct 679 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 719 >seq13431 Length=1516 Score = 145 bits (160), Expect = 2e-32 Identities = 246/356 (69%), Gaps = 9/356 (3%) Strand=Plus/Plus Query 154 TGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCA 213 ||| ||| | ||||||| | ||||||||||| |||||| || |||||||| ||| Sbjct 984 TGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCA 1043 Query 214 ACGAGCGCAACCCTTAAGCTTAGTTGCCATC--ATT-------AAGTTGGGCACTCTAAG 264 ||||||| |||| ||||||| ||||| ||| | | ||||||| ||||| Sbjct 1044 ACGAGCGAGACCCACGCCCTTAGTTACCATCAGATTCTCCGGAATGCTGGGCACACTAAG 1103 Query 265 TTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTA 324 ||| ||| |||| ||| ||||||||| | |||||||| | || ||||||| | Sbjct 1104 GGGACCGCCAGTGATAAATTGGAGGAAGGAGTGGACGACGGTAGGTCCGTATGCCCCGAA 1163 Query 325 TGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTC 384 | |||||||||| || |||||||||| |||| ||| ||| ||| ||| Sbjct 1164 TCCCCTGGGCTACACGCGGGCTACAATGGCTGGGACAATGGGTTCCGACGCCGAAAGGCG 1223 Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444 | |||| |||| | || ||||||||||| | ||| |||||| | ||||| Sbjct 1224 GTGGTAATCTTTTAAACCTTGTCGTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAA 1283 Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCC 500 |||||||| ||||||||| ||| || |||||||||||| || ||||| Sbjct 1284 GCTGGAATGCGTAGTAATCGCGTGTCACAATCGCGCGGTGAATACGTCCCTGCTCC 1339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503625158080