Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq8765 387 4e-105
seq20041 203 1e-49
seq13431 145 2e-32
>seq8765
Length=4561
Score = 387 bits (428), Expect = 4e-105
Identities = 393/501 (78%), Gaps = 12/501 (2%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 573 TACGATCGCAAGGTTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAGCAT 632
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120
|||||||||||||| | |||||| |||||||||| ||||| | | ||||
Sbjct 633 GTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAA--CGTAAGACCGAGA 690
Query 121 TAGAGATAGAG-GTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCA 179
| || ||| | || |||||||||| || ||||| ||||||||||||||||
Sbjct 691 TGCAGG-AGACTGCATCGCCTTCGGGGGTTT---TGCGAGGTGCTGCATGGTTGTCGTCA 746
Query 180 GCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239
||||||| |||||| |||| |||||||||| ||||||||||||||||||| | |||||
Sbjct 747 GCTCGTGCCGTGAGGTGTTAGGTTAAGTCCTGCAACGAGCGCAACCCTTACCTTCAGTTG 806
Query 240 CCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCG-GAGGAAGGTGG 296
||| || ||| | |||| ||||| |||||| | ||| | |||||||||||
Sbjct 807 CCAGCACGTAATGGTGGGGACTCTGGAGGAACTGCCTACG-CAAGTAGAGAGGAAGGTGG 865
Query 297 GGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACA 356
||| |||||||||||| || | |||||||| |||||||||||||||||||||||
Sbjct 866 GGATGACGTCAAATCAGCACGGCCCTTATGTCCGGGGCTACACACGTGCTACAATGGCGC 925
Query 357 ATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGG 416
| ||| |||||||||| |||||||| ||| ||||| ||||| |||||||||||
Sbjct 926 ACACAGAGGGCAGCGACCCCGCGAGGGGGAGCCAATCCATGAAAGTGCGTCTCAGTTCGG 985
Query 417 ATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CAT 475
|| | |||||| ||| ||||| ||||| |||| ||||||||||||| ||||| |||
Sbjct 986 ATCGGAGTCTGGAACCCGACTCCGTGAAGTTGGATTCGCTAGTAATCGCGCATCAGCCAT 1045
Query 476 GCTACGGTGAATACGTTCCCG 496
| |||||||||||||||||
Sbjct 1046 GACGCGGTGAATACGTTCCCG 1066
>seq20041
Length=719
Score = 203 bits (224), Expect = 1e-49
Identities = 179/221 (81%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60
|||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 499 TACGTACGCAAGTATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 558
Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCT 119
||||||||||||||||||||||| |||||||||||| ||||||| | | |
Sbjct 559 GTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGGGTTTGACATGGGAACGCCGCGG 618
Query 120 CTAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTG-ACAGGTGATGCATGGTTGTCGTC 178
| |||||| | |||| | | || | ||||||| ||||||| |||||||
Sbjct 619 CGAGAGATCGCCGTTTTGCAGCAATGCAACGTTCCGCACAGGTGCTGCATGGCTGTCGTC 678
Query 179 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 219
|||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGC 719
>seq13431
Length=1516
Score = 145 bits (160), Expect = 2e-32
Identities = 246/356 (69%), Gaps = 9/356 (3%)
Strand=Plus/Plus
Query 154 TGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCA 213
||| ||| | ||||||| | ||||||||||| |||||| || |||||||| |||
Sbjct 984 TGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCA 1043
Query 214 ACGAGCGCAACCCTTAAGCTTAGTTGCCATC--ATT-------AAGTTGGGCACTCTAAG 264
||||||| |||| ||||||| ||||| ||| | | ||||||| |||||
Sbjct 1044 ACGAGCGAGACCCACGCCCTTAGTTACCATCAGATTCTCCGGAATGCTGGGCACACTAAG 1103
Query 265 TTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTA 324
||| ||| |||| ||| ||||||||| | |||||||| | || ||||||| |
Sbjct 1104 GGGACCGCCAGTGATAAATTGGAGGAAGGAGTGGACGACGGTAGGTCCGTATGCCCCGAA 1163
Query 325 TGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTC 384
| |||||||||| || |||||||||| |||| ||| ||| ||| |||
Sbjct 1164 TCCCCTGGGCTACACGCGGGCTACAATGGCTGGGACAATGGGTTCCGACGCCGAAAGGCG 1223
Query 385 AAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAA 444
| |||| |||| | || ||||||||||| | ||| |||||| | |||||
Sbjct 1224 GTGGTAATCTTTTAAACCTTGTCGTAGTTCGGATTGAGGGCTGTAACTCGCCCTCATGAA 1283
Query 445 GCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCC 500
|||||||| ||||||||| ||| || |||||||||||| || |||||
Sbjct 1284 GCTGGAATGCGTAGTAATCGCGTGTCACAATCGCGCGGTGAATACGTCCCTGCTCC 1339
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1503625158080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |