Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq15955 333 4e-89
>seq15955
Length=1132
Score = 333 bits (368), Expect = 4e-89
Identities = 232/260 (89%), Gaps = 4/260 (2%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 ACTCGTTGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 280
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-C 120
|||||||||||||||||||||||| | | || | ||||||||||||||||| | |
Sbjct 279 CCTGTTATTGCCTCAAACTTCCATAGATTAAAAATCTATAGTCCCTCTAAGAAGTTAAAC 220
Query 121 CACCAACCA--TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178
||| || | || ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 219 CACGAATAAAATATTCGC-GTAACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 161
Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 160 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 101
Query 239 GAAAGAGCTATCAATCTGTC 258
||||||||| ||||||||||
Sbjct 100 GAAAGAGCTCTCAATCTGTC 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796607619363
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |