Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq15955 333 4e-89 >seq15955 Length=1132 Score = 333 bits (368), Expect = 4e-89 Identities = 232/260 (89%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 339 ACTCGTTGACTTCATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 280 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG-C 120 |||||||||||||||||||||||| | | || | ||||||||||||||||| | | Sbjct 279 CCTGTTATTGCCTCAAACTTCCATAGATTAAAAATCTATAGTCCCTCTAAGAAGTTAAAC 220 Query 121 CACCAACCA--TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 178 ||| || | || ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 219 CACGAATAAAATATTCGC-GTAACTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAAT 161 Query 179 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 160 TAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAA 101 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||| |||||||||| Sbjct 100 GAAAGAGCTCTCAATCTGTC 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796607619363