Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq442 363 3e-98 seq20558 132 8e-29 seq8777 78.8 2e-12 seq8765 75.2 2e-11 >seq442 Length=77255 Score = 363 bits (402), Expect = 3e-98 Identities = 261/296 (88%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 11404 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 11463 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 11464 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCG 11523 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11524 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 11583 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 11584 TGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACC 11643 Query 240 TCAAA-TTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || ||| | |||||||||||||||||| ||||| ||| |||| || Sbjct 11644 AGAAACTATC--TGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTC 11697 >seq20558 Length=687 Score = 132 bits (146), Expect = 8e-29 Identities = 173/238 (73%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 46 AACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAA 105 ||| ||||||||||| ||||||||||||||||||||||||||| ||| |||| |||||| Sbjct 287 AACCAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCCTTTAATGGGCGAACAA 346 Query 106 TCCAACGCTTACCGAATTCTGCTTC---GGTATGATAGGAAGAGCCGACATCGAAGGATC 162 || || ||| | | ||||| | | ||| | |||| |||||||||||| | | Sbjct 347 CCCCACCCTT---GGGTGCTGCTGCACACCCAGGATGGAAAGAACCGACATCGAAGTAGC 403 Query 163 AAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 || ||| |||| |||| | |||| |||| || | ||||||||||| | |||| || Sbjct 404 AAGCCGCAGGGTCGATATGGGCTCTTGCCTGCGACCACCCAGTTATCCCCGAGGTAGTTT 463 Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||| || ||| | || | | ||||| | ||| ||| |||||| ||||| Sbjct 464 TTCTGTCATCTCAACCCCCCATCAACGAGGAGTTTGAGGTTCGCTAGGCCCGGCTTTC 521 >seq8777 Length=4537 Score = 78.8 bits (86), Expect = 2e-12 Identities = 123/175 (70%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 1129 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACC 1188 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||| ||| |||| | | | ||| || ||||||||||||| | |||| | Sbjct 1189 CTTGGGACC---TTCTCCAGCCCCAGGATGTGACGAGCCGACATCGAGGTGCCAAACCAC 1245 Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTT 224 ||||| ||||| | ||||| | | |||| |||||||| | ||| ||||| Sbjct 1246 CCCGTCGATATGAGCTCTTGGGGGGGATCAGCCTGTTATCCCCGGAGTACCTTTT 1300 >seq8765 Length=4561 Score = 75.2 bits (82), Expect = 2e-11 Identities = 126/181 (70%), Gaps = 6/181 (3%) Strand=Plus/Minus Query 47 ACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAT 106 || || |||||||| |||| | | |||||||||| ||| || ||| | || ||||| Sbjct 4059 ACCAAACTGTCTCACGACGTTTTGAACCCAGCTCGCGTGCCGCTTTAATTGGCGAACAGC 4000 Query 107 CCAACGCTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCA 163 | ||| ||| ||| |||| | | | ||| || ||||||||||||| | || Sbjct 3999 CAAACCCTTGGGACC---TTCTCCAGCCCCAGGATGCGACGAGCCGACATCGAGGTGCCA 3943 Query 164 AAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTT 223 || | ||||||||||||||||||| | | |||| |||||||| ||| |||| Sbjct 3942 AACCTCCCCGTCGCTATGAACGCTTGGGGGAGATCAGCCTGTTATCCCCAGAGTACCTTT 3883 Query 224 T 224 | Sbjct 3882 T 3882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854187057888