Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq8765 224 2e-56 seq16320 190 4e-46 seq8777 143 5e-32 >seq8765 Length=4561 Score = 224 bits (248), Expect = 2e-56 Identities = 249/328 (76%), Gaps = 3/328 (1%) Strand=Plus/Plus Query 13 GAGGCAAAGAGATGGATACGCCAGTATTCAAGGAGCCGCTGTTGGGATACTACCCCTGTT 72 ||||| | ||| || |||||||| || |||||||| |||| |||| |||| || Sbjct 3575 GAGGCTATGAGCCGGCGACGCCAGTCGTCGGGGAGCCGCCGTTGAAATACCACCCTTGCC 3634 Query 73 GTATTGGATTTCTAACCGGACGACGTATAACCGTTGAC-GGGACAGTGTCAGTCGGGCAG 131 || || ||||||| ||| | ||| ||| ||||| ||||| | || ||| Sbjct 3635 CGTTTTGAGATCTAACCTCGTCCCGTC-ATCCGG-GACAGGGACCGTGTCTGATGGTCAG 3692 Query 132 TTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTT 191 |||||||||||||||||||||||||| ||||||||||| |||||| | |||||||| Sbjct 3693 TTTGACTGGGGCGGTCGCCTCCCAAAAGGTAACGGAGGCATCCAAAGGTTCCCTCAGCGC 3752 Query 192 GGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAG 251 || ||||| | ||||| || |||||||| ||||| | |||||||||| || || | Sbjct 3753 GGTCGGAAATCGCGCGCAGAGCACAAAGGCATAAGGGAGCTTGACTGCGAGACGGACACG 3812 Query 252 TCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGC 311 || |||||| |||||||| ||||||| |||||| ||||| | | ||||| |||||| || Sbjct 3813 TCGAGCAGGTACGAAAGTAGGGCTTAGTGATCCCGCGGTACAGCGTGGAAAGGCCGTTGC 3872 Query 312 TCGACGGATAAAAGCTACCCTGGGGATA 339 || | ||||||||| ||| ||||||||| Sbjct 3873 TCAATGGATAAAAGGTACTCTGGGGATA 3900 >seq16320 Length=1081 Score = 190 bits (210), Expect = 4e-46 Identities = 171/215 (80%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 125 CGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCC 184 |||| ||||||||||||| |||||||||| |||| ||||||||||| |||||| | ||| Sbjct 165 CGGGTAGTTTGACTGGGGTGGTCGCCTCCAAAAGGGTAACGGAGGCTTCCAAAGGTCCCC 224 Query 185 TCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 ||||| || ||| |||| |||| ||||||| |||| ||||| | |||||||||| | Sbjct 225 TCAGCACGGTTGGCAACCGTGCGTCGAGTGCAATGGCAGAAGGGGGCTTGACTGCGAGGC 284 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 |||| | |||| |||||| |||| || |||||||||||| | | |||||| || Sbjct 285 AGACAAGCCGGACAGGTGCGAAAGCAGGGCATAGTGATCCGGCGGTACCGCATGGAAGGG 344 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||||||| | ||||||||| ||| | ||||||| Sbjct 345 CCGTCGCTCAAAGGATAAAAGGTACTCCGGGGATA 379 >seq8777 Length=4537 Score = 143 bits (158), Expect = 5e-32 Identities = 164/217 (76%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||||||||||||||||| |||||||||| |||| ||||||||||| |||||| | |||| Sbjct 1497 GGGCAGTTTGACTGGGGTGGTCGCCTCCAAAAGCGTAACGGAGGCTTCCAAAGGTGCCCT 1438 Query 186 CAGCTTGGATGGAAACCATGC--GCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACA 243 | | | ||| |||| | || ||||||| |||| ||||| | ||||||| || Sbjct 1437 CGGGCCGATTGGTAACCGGCCTTACAGAGTGCAATGGCATAAGGGCGCTTGACTGGGAGG 1378 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG-TGCTGAATGGAAC 302 || | |||||| | |||| | |||| || ||||||||||| ||| | |||||| Sbjct 1377 GAGACATCCCGAGCAGGCAGGAAACTGGGGCATAGTGATCCGGCGGATGC-GTATGGAAG 1319 Query 303 GGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||||||| | ||||||||| ||| | ||||||| Sbjct 1318 CTCCGTCGCTCAAAGGATAAAAGGTACTCCGGGGATA 1282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982155156448