Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq8777 221 1e-55
seq8765 168 7e-40
>seq8777
Length=4537
Score = 221 bits (244), Expect = 1e-55
Identities = 137/151 (91%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 1897
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1898 AGCTCGCGGCTGAGACAGCGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCC 1957
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||||||||
Sbjct 1958 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1988
Score = 87.8 bits (96), Expect = 2e-15
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACT 70
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACT 1705
>seq8765
Length=4561
Score = 168 bits (186), Expect = 7e-40
Identities = 125/150 (83%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83
||||||||| ||||| |||||| |||||||||||||| ||||||||||||| ||
Sbjct 3516 GGGGTCTTTCCGTCCAGGTGCGGGTTGCCGGCATCTTCACCGGCACTACAATTTCACCGA 3457
Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 3456 GCTCATGGCTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCG 3397
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 3396 ACAAGGAATTTCGCTACCTTAGGACCGTTA 3367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547067883177
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |