Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq8777 221 1e-55 seq8765 168 7e-40 >seq8777 Length=4537 Score = 221 bits (244), Expect = 1e-55 Identities = 137/151 (91%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1838 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 1897 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||||| ||| |||||||| |||||||||||||||||||||||||||||| Sbjct 1898 AGCTCGCGGCTGAGACAGCGTCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCC 1957 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1958 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1988 Score = 87.8 bits (96), Expect = 2e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACT 70 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1658 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACT 1705 >seq8765 Length=4561 Score = 168 bits (186), Expect = 7e-40 Identities = 125/150 (83%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| ||||| |||||| |||||||||||||| ||||||||||||| || Sbjct 3516 GGGGTCTTTCCGTCCAGGTGCGGGTTGCCGGCATCTTCACCGGCACTACAATTTCACCGA 3457 Query 84 GCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 ||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 3456 GCTCATGGCTGAGACAGTGCCCAGATCGTTACACCATTCGTGCAGGTCGGAACTTACCCG 3397 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 3396 ACAAGGAATTTCGCTACCTTAGGACCGTTA 3367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547067883177