Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq19390 266 7e-69 seq8765 129 1e-27 seq13431 73.4 8e-11 >seq19390 Length=764 Score = 266 bits (294), Expect = 7e-69 Identities = 267/339 (79%), Gaps = 7/339 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||||||||||||||| | |||||||| ||| |||| ||||||||||||||| Sbjct 435 TTTACAATCCGAAGACCTTCTTCCTT-CACGCGGCGTTG-CTGGGTCAGGCTTTCGCCCA 378 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | Sbjct 377 TTGCCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAAT 318 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| ||||| ||||||||||||| ||||| ||| Sbjct 317 GTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGCAGCCTTGGTGAGCCGTTACCCCAC 258 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGC-CCGAAGG--TCCCCTGC 238 ||||||||||||| || | || ||||| |||| | || || || |||| | Sbjct 257 CAACTAGCTAATCAGATATGAGCCCATCTTTCAGCGGATTGCTCCTTTGGTATCCCGAGG 198 Query 239 TTTCTCCCGTAGGAC-GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTAC 297 | | | | | || |||||||||||||| ||||||| | ||| |||||| || Sbjct 197 ATGCCCTCAAAATACATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTGA 138 Query 298 CAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT 335 |||||| || || | ||||||||||||||||||| || Sbjct 137 AAGGCAGGTTGCTCATACATTACTCACCCGTCCGCCACT 99 >seq8765 Length=4561 Score = 129 bits (142), Expect = 1e-27 Identities = 87/96 (91%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||| |||||| |||| || | |||||| ||||||||||| ||||||||||| Sbjct 96 CACGCGGCAT-GGCTGGGTCAGAATTCCTTCCATTGCCCAATATTCCCTACTGCTGCCTC 38 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124 |||||||||||||||||||||||||||||||||||| Sbjct 37 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 2 >seq13431 Length=1516 Score = 73.4 bits (80), Expect = 8e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 79 CTGCTGCCTCCCGTAGGAGTCTGGA-CCGTGTCTCAG-TTCCAGTGTGACTGATCATCCT 136 ||||||| |||||||| | ||||| || |||||||| ||||| | | | || | || Sbjct 342 CTGCTGCGCCCCGTAGG-GCCTGGAACCTTGTCTCAGGTTCCA-TCTCCGGGCTCTTGCT 285 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 |||| | | ||| |||| | | |||||| ||||||||||| |||||||| |||||| Sbjct 284 CTCACAACCCGTACAGATCATAGGCTTGGTAAGCCATTACCTAACCAACTACCTAATC 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071732825440