Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq19390 266 7e-69
seq8765 129 1e-27
seq13431 73.4 8e-11
>seq19390
Length=764
Score = 266 bits (294), Expect = 7e-69
Identities = 267/339 (79%), Gaps = 7/339 (2%)
Strand=Plus/Minus
Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61
|||||||||||||||||||||| | |||||||| ||| |||| |||||||||||||||
Sbjct 435 TTTACAATCCGAAGACCTTCTTCCTT-CACGCGGCGTTG-CTGGGTCAGGCTTTCGCCCA 378
Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121
||| ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |
Sbjct 377 TTGCCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAAT 318
Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181
||| | | ||| |||||||| || | ||| ||||| ||||||||||||| ||||| |||
Sbjct 317 GTGGCCGTTCAACCTCTCAGTCCGGCTACTGATCGCAGCCTTGGTGAGCCGTTACCCCAC 258
Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGC-CCGAAGG--TCCCCTGC 238
||||||||||||| || | || ||||| |||| | || || || |||| |
Sbjct 257 CAACTAGCTAATCAGATATGAGCCCATCTTTCAGCGGATTGCTCCTTTGGTATCCCGAGG 198
Query 239 TTTCTCCCGTAGGAC-GTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTAC 297
| | | | | || |||||||||||||| ||||||| | ||| |||||| ||
Sbjct 197 ATGCCCTCAAAATACATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCCCTCTGA 138
Query 298 CAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT 335
|||||| || || | ||||||||||||||||||| ||
Sbjct 137 AAGGCAGGTTGCTCATACATTACTCACCCGTCCGCCACT 99
>seq8765
Length=4561
Score = 129 bits (142), Expect = 1e-27
Identities = 87/96 (91%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||| |||||| |||| || | |||||| ||||||||||| |||||||||||
Sbjct 96 CACGCGGCAT-GGCTGGGTCAGAATTCCTTCCATTGCCCAATATTCCCTACTGCTGCCTC 38
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 124
||||||||||||||||||||||||||||||||||||
Sbjct 37 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTG 2
>seq13431
Length=1516
Score = 73.4 bits (80), Expect = 8e-11
Identities = 90/118 (76%), Gaps = 4/118 (3%)
Strand=Plus/Minus
Query 79 CTGCTGCCTCCCGTAGGAGTCTGGA-CCGTGTCTCAG-TTCCAGTGTGACTGATCATCCT 136
||||||| |||||||| | ||||| || |||||||| ||||| | | | || | ||
Sbjct 342 CTGCTGCGCCCCGTAGG-GCCTGGAACCTTGTCTCAGGTTCCA-TCTCCGGGCTCTTGCT 285
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
|||| | | ||| |||| | | |||||| ||||||||||| |||||||| ||||||
Sbjct 284 CTCACAACCCGTACAGATCATAGGCTTGGTAAGCCATTACCTAACCAACTACCTAATC 227
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071732825440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |