Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq16241 302 2e-79
seq8777 300 6e-79
seq10422 273 8e-71
seq8765 273 8e-71
seq20578 100 1e-18
seq23756 96.9 1e-17
seq20009 93.3 2e-16
>seq16241
Length=1089
Score = 302 bits (334), Expect = 2e-79
Identities = 403/550 (73%), Gaps = 20/550 (4%)
Strand=Plus/Minus
Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTC 112
|| ||||| |||||| | || || |||| | || | ||||| | |||| ||||||||
Sbjct 603 GGTATTCGCAGTTTGATAGAGTTTGGTAGGATTTGAGTCCCCCGCGCCCATTCAGTGCTC 544
Query 113 TACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT 172
|||| || || | | || ||| |||||| |||||| ||||||||||||||
Sbjct 543 TACCCCCATCAATTACTCCATGAGGCTAGCCCTAAAGCTATTTCGAGGAGAACCAGCTAT 484
Query 173 CACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTA 232
| | ||| |||||| |||| ||||||||||||| |||||||| | |||||||| |
Sbjct 483 CTCCGGGTTCGATTGGAATTTCTCCCCTATCCACAGCTCATCCCCGCCTTTTTCAACAGA 424
Query 233 AGT-GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291
|| |||||||||||||| | | | |||| | | |||||||||| |||||||||| |||
Sbjct 423 CGTCTGGTTCGGTCCTCCATGGGATTTTACTCCCACTTCAACCTGGCCATGGATAGGTCA 364
Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351
| | ||||||||| || ||| ||| || |||||| ||| |||||||||||||| ||
Sbjct 363 CCCGGTTTCGGGTCTACGTCATGCAACT-AT-CGCCCTCTTCAGACTCGCTTTCGCTTCG 306
Query 352 GCT---ACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408
||| | || || |||||||||| || |||| ||||||| || | |||| ||
Sbjct 305 GCTCCGAACCTTCAGTTCTTAACCTCGCTGCATAACG-TAACTCGCCGGTCCGTTCTACA 247
Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468
||| | ||| | | |||| | | |||| || | | ||||| ||||
Sbjct 246 AAAAGTACG-----AGATCGTACATCGCGTGTACTT----TC--TCTGCTTGTAAACACA 198
Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528
|||||||||| || ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 197 GGGTTTCAGGTTCTCTTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTAC 138
Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588
| | ||||||||||||| | |||||||||||| |||||||||| || | ||| |
Sbjct 137 -TATGCGCTATCGGTCACTGA-TCGTATTTAGGCTTGGGGGGTGGTCCCCCCTGCTTCCC 80
Query 589 ACGAAATTTC 598
|| |||||
Sbjct 79 ACCGGATTTC 70
>seq8777
Length=4537
Score = 300 bits (332), Expect = 6e-79
Identities = 400/542 (74%), Gaps = 24/542 (4%)
Strand=Plus/Plus
Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111
|||||||||||| | | | || || || ||| |||| || |||| | || |||
Sbjct 2791 GCATTCGGAGTTCGTCAGGTCGCGATAGGCG-GTGAAGCCCTCTTGACCTATCGGTCGCT 2849
Query 112 CTACCTC-CGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170
||||||| | || ||| ||| |||| |||||||||||| |||||||||| || ||||
Sbjct 2850 CTACCTCACAGGGTGAA-CACAGCACGCGGCACCTAAATGCCTTTCGGGGAGTACGAGCT 2908
Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC- 229
||| | ||||||||||||||||||| |||| |||| |||||| ||||||||
Sbjct 2909 ATCTCCGAGTTTGATTGGCCTTTCACTCCTACACACAACTCATCCAGAAGCTTTTCAACG 2968
Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289
|| | | ||| ||| |||||| | || ||||| | ||||| |||| ||||| |||||
Sbjct 2969 CTTA-TTGGTGCGGGCCTCCATCCCGTGTTACCGGGACTTCACCCTGGCCATGTGTAGAT 3027
Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCAT-ACGCCCTATTCGGACTCGCTTTCGCT 348
|||| | |||| |||| | | | |||||| ||| ||| ||| | ||||||||| ||
Sbjct 3028 CACTCGGTTTCGCGTCTACCCCATCCGACTCATCACGGCCTGTTCAGCCTCGCTTTCACT 3087
Query 349 ACGGCTACCCCACA---CGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405
||| | | | || | |||||||||| || | | |||||| ||| ||||| |
Sbjct 3088 GCGGTTGCGTCTCAGAGAGACTTAACCTCGCCGGAC-ATGGTAACTCGTAGGTTCATTAT 3146
Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465
|||||||||||||||||| | | ||||| |||||||| | ||| ||||
Sbjct 3147 GCAAAAGGCACGCCGTCAC-----ATCAAAAAG------ATGCTCCGACCGCTTGAAGGC 3195
Query 466 ACATGGTTTCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACG 524
|||||||||| ||| ||||||||||| |||||| ||||||||||||||||||||
Sbjct 3196 GTCTGGTTTCAGGGACTGTTTCACTCCCCTAATAGGGGTGCTTTTCACCTTTCCCTCACG 3255
Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGAT 584
||||| || ||||||||||| || ||||||||||| ||| ||| |||||||| | |||
Sbjct 3256 GTACTGGTTCGCTATCGGTCTCCCGGGAGTATTTAGCCTTGCCGGATGGTCCCGGCGGAT 3315
Query 585 TC 586
||
Sbjct 3316 TC 3317
>seq10422
Length=2666
Score = 273 bits (302), Expect = 8e-71
Identities = 410/567 (72%), Gaps = 24/567 (4%)
Strand=Plus/Plus
Query 29 CTCACAGCCGCGCTCTCACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG 88
||||| ||||| | | | || ||||||||||||||||| || |||||| ||
Sbjct 866 CTCACTCCCGCGGTGGC-CGTCGCGGCATTCGGAGTTTGGCTGGGGTCGGTAGGCGGCGA 924
Query 89 GGCCCCCTAGACCATCCAGTG-CTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAA 147
||||||| | ||| |||| ||||||||||| || | | | ||||| ||||| |||||
Sbjct 925 AGCCCCCTCGCCCAATCAGTATCTCTACCTCCGCGACGCATCCCGCGAGGCTGCCCCTAA 984
Query 148 ATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACA 207
| ||||||||||||| || ||||||| | || ||||||||||||||||||||| || |
Sbjct 985 AGGCATTTCGGGGAGTACGAGCTATCTCTCAGCTTGATTGGCCTTTCACCCCTACCCCAA 1044
Query 208 GGTCATCCCCTCAGTTTTCAAC-CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266
|||| ||| |||||||| || | ||||||| |||||| ||| | | |||
Sbjct 1045 GGTCGTCCGAAAGCTTTTCAACGCTCA-CCGGTTCGGCCCTCCA-GCGCCTGTCACGGCG 1102
Query 267 -CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325
||||| ||||||| || |||||| | | |||| ||| | || |||| ||
Sbjct 1103 CCTTCAGCCTGCCCTGGGGTAGATCGCAAAGTTTCGCGTCCGCCGCCGGCGACTC-CGCG 1161
Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTAC---CCCACACG-GGTTAACCTCGCGACAC 381
|||| ||||| |||||| ||||| ||| | | || || | | | |||||| | |
Sbjct 1162 CCCTCTTCGGGCTCGCTCTCGCTCCGGGTCCGCGCCTCCAGGCGCTCCCCCTCGCCGC-C 1220
Query 382 AACG-CAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGC 440
||| ||||| ||||||||| | ||||||||||||||||||| || |||||
Sbjct 1221 GACGAGCGACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACC----ACTAAAAAG-- 1274
Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCC-AG 499
|||||||| | ||| |||| || ||||||||| || ||||||||| | || |
Sbjct 1275 ----TGGCTCCGACCGCTTGCAGGCGCACGGTTTCAGGGTCTCTTTCACTCCGCTCCTCG 1330
Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559
||| ||||||||||||||||||||||||| || ||||||||||| | | ||| |||
Sbjct 1331 CGGTGCTTTTCACCTTTCCCTCACGGTACTCGTTCGCTATCGGTCTCACGGTAGTGCTTA 1390
Query 560 GGCTTAACGGGTGGTCCCGCCAGATTC 586
| ||| ||| |||| ||||| | |||
Sbjct 1391 GCCTTGGCGGATGGTGCCGCCTGCTTC 1417
Score = 100 bits (110), Expect = 1e-18
Identities = 115/152 (76%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 21 CCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTA 80
||||| ||||| ||||| || || | |||||||||||||||||||| |||| |
Sbjct 2516 CCCGCGCCCTCACTCCCGCGGTCG-ACGCCGCGGCATTCGGAGTTTGGTTGGGGTCGGCA 2574
Query 81 AGCTTGTGGGCCCCCTAGACCATCCAGTG-CTCTACCTCCGGGAAGAAACACGCGACGCT 139
|| ||||||| | ||||||||| ||||||||||| | | | | ||||| |||
Sbjct 2575 GGCGGCGAAGCCCCCTCGCCCATCCAGTATCTCTACCTCCGCGCCGCATCCCGCGAGGCT 2634
Query 140 GCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
|| |||||| ||||||||||||| || |||||
Sbjct 2635 GCCCCTAAAGGCATTTCGGGGAGTACGAGCTA 2666
>seq8765
Length=4561
Score = 273 bits (302), Expect = 8e-71
Identities = 348/467 (75%), Gaps = 29/467 (6%)
Strand=Plus/Minus
Query 134 GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTT 193
|| ||||| |||||| ||||||||| ||| || ||||||| | ||||||||||||||||
Sbjct 2316 GAGGCTGCCCCTAAAGGCATTTCGGAGAGTACGAGCTATCTCTCAGTTTGATTGGCCTTT 2257
Query 194 CACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA-CG 252
||| |||| | || |||||| | |||||||| | ||||||| |||||| |
Sbjct 2256 CACTCCTACACGCACCTCATCCAAAAACTTTTCAACGTTTACTGGTTCGGCCCTCCATTG 2197
Query 253 CGGTCTTACCCGCGCTTCAACCTG--CCCATGGATAGATCACTTCGCTTCGGGTCTTGAT 310
|||| ||| | ||||| |||| | |||| ||||||||| | |||| |||| |
Sbjct 2196 CGGT-TTAGCGCAACTTCAGCCTGGACGCATG--TAGATCACTAAGTTTCGCGTCTGCCT 2140
Query 311 --CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC----CCCACACG 364
| || ||||| ||||||| ||| |||||||||||||| ||| | | | || ||
Sbjct 2139 TACATG--ACTCA-ACGCCCTCTTCAGACTCGCTTTCGCTTCGGTTCCGCGTCTCAAAC- 2084
Query 365 GGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCAC 424
| ||||||| || | | ||| |||||| ||||||||| | ||||||||||||||||||
Sbjct 2083 GCTTAACCTTGCCATGC-ACGGCAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCAC 2025
Query 425 CTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTAT 484
| | | | | | |||||||| | ||||| || || |||||||||| || |
Sbjct 2024 C---------ACACGTAGT--GGCTCCGACCGCTTGTAAGCGCACGGTTTCAGGTTCTCT 1976
Query 485 TTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543
|||||||||| | ||||| |||||||||||||| |||| |||||||| ||||||||||
Sbjct 1975 TTCACTCCCCTGTTCGGGGTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGT 1916
Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590
| | |||||||||||| ||| ||| |||| ||||| | |||| ||
Sbjct 1915 CTCTCAGGAGTATTTAGCCTTGGCGGATGGTGCCGCCTGCTTCAGAC 1869
>seq20578
Length=685
Score = 100 bits (110), Expect = 1e-18
Identities = 144/199 (72%), Gaps = 3/199 (2%)
Strand=Plus/Minus
Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGC-TTGTGGGCCCCCTAGACCATCCAGT-GCT 111
|||||||||||||| | || || | || || | |||| | | || |||| |||
Sbjct 198 GCATTCGGAGTTTGTCAGGATTTGGCAGGCGATGAAGCCCCCGCATCCTAT-CAGTAGCT 140
Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171
||||||| | | | | ||| |||| |||||| |||||||||||| || |||||
Sbjct 139 CTACCTCACGCAGCGACCGTCCGAGGCTGTCCCTAAAGACATTTCGGGGAGTACGAGCTA 80
Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231
|| | ||||||||||||||||||| |||| ||||| |||||| | ||||||||
Sbjct 79 TCTCCCAGTTTGATTGGCCTTTCACTCCTACCCACAACTCATCCAAGCCCTTTTCAACGG 20
Query 232 AAGTGGGTTCGGTCCTCCA 250
|| ||||||| ||||||
Sbjct 19 AAACTGGTTCGGGCCTCCA 1
>seq23756
Length=540
Score = 96.9 bits (106), Expect = 1e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| |||
Sbjct 540 CTTTTCACCTTTCCCTCACGGTACTA-TGCGCTATCGGTCACTAAGGAGTATTTAGCCTT 482
Query 565 AACGGGTGGTCCC 577
| ||||||||||
Sbjct 481 ACGGGGTGGTCCC 469
>seq20009
Length=722
Score = 93.3 bits (102), Expect = 2e-16
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTC 112
||||||||||||||| | | || ||||||||| ||||||| | ||| ||||||||
Sbjct 131 GGCATTCGGAGTTTGATAGTCTTTGGTAAGCTTTGACGCCCCCTCGGACATTCAGTGCTC 72
Query 113 TACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT 172
||||||| || | ||| ||| ||| |||||| |||||||||||||||||||||
Sbjct 71 TACCTCC-ATCAGGATCACACGAGGCTAGCCCTAAAGCTATTTCGGGGAGAACCAGCTAT 13
Query 173 C 173
|
Sbjct 12 C 12
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1817146999552
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