Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq16241 302 2e-79 seq8777 300 6e-79 seq10422 273 8e-71 seq8765 273 8e-71 seq20578 100 1e-18 seq23756 96.9 1e-17 seq20009 93.3 2e-16 >seq16241 Length=1089 Score = 302 bits (334), Expect = 2e-79 Identities = 403/550 (73%), Gaps = 20/550 (4%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTC 112 || ||||| |||||| | || || |||| | || | ||||| | |||| |||||||| Sbjct 603 GGTATTCGCAGTTTGATAGAGTTTGGTAGGATTTGAGTCCCCCGCGCCCATTCAGTGCTC 544 Query 113 TACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT 172 |||| || || | | || ||| |||||| |||||| |||||||||||||| Sbjct 543 TACCCCCATCAATTACTCCATGAGGCTAGCCCTAAAGCTATTTCGAGGAGAACCAGCTAT 484 Query 173 CACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTA 232 | | ||| |||||| |||| ||||||||||||| |||||||| | |||||||| | Sbjct 483 CTCCGGGTTCGATTGGAATTTCTCCCCTATCCACAGCTCATCCCCGCCTTTTTCAACAGA 424 Query 233 AGT-GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 || |||||||||||||| | | | |||| | | |||||||||| |||||||||| ||| Sbjct 423 CGTCTGGTTCGGTCCTCCATGGGATTTTACTCCCACTTCAACCTGGCCATGGATAGGTCA 364 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 | | ||||||||| || ||| ||| || |||||| ||| |||||||||||||| || Sbjct 363 CCCGGTTTCGGGTCTACGTCATGCAACT-AT-CGCCCTCTTCAGACTCGCTTTCGCTTCG 306 Query 352 GCT---ACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCA 408 ||| | || || |||||||||| || |||| ||||||| || | |||| || Sbjct 305 GCTCCGAACCTTCAGTTCTTAACCTCGCTGCATAACG-TAACTCGCCGGTCCGTTCTACA 247 Query 409 AAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACA 468 ||| | ||| | | |||| | | |||| || | | ||||| |||| Sbjct 246 AAAAGTACG-----AGATCGTACATCGCGTGTACTT----TC--TCTGCTTGTAAACACA 198 Query 469 TGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTAC 528 |||||||||| || ||||||||||| || ||||| |||||||||||||||||||||||| Sbjct 197 GGGTTTCAGGTTCTCTTTCACTCCCCTCCCGGGGTTCTTTTCACCTTTCCCTCACGGTAC 138 Query 529 TTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCAC 588 | | ||||||||||||| | |||||||||||| |||||||||| || | ||| | Sbjct 137 -TATGCGCTATCGGTCACTGA-TCGTATTTAGGCTTGGGGGGTGGTCCCCCCTGCTTCCC 80 Query 589 ACGAAATTTC 598 || ||||| Sbjct 79 ACCGGATTTC 70 >seq8777 Length=4537 Score = 300 bits (332), Expect = 6e-79 Identities = 400/542 (74%), Gaps = 24/542 (4%) Strand=Plus/Plus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGG-GCCCCCTAGACCATCCAGT-GCT 111 |||||||||||| | | | || || || ||| |||| || |||| | || ||| Sbjct 2791 GCATTCGGAGTTCGTCAGGTCGCGATAGGCG-GTGAAGCCCTCTTGACCTATCGGTCGCT 2849 Query 112 CTACCTC-CGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCT 170 ||||||| | || ||| ||| |||| |||||||||||| |||||||||| || |||| Sbjct 2850 CTACCTCACAGGGTGAA-CACAGCACGCGGCACCTAAATGCCTTTCGGGGAGTACGAGCT 2908 Query 171 ATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAAC- 229 ||| | ||||||||||||||||||| |||| |||| |||||| |||||||| Sbjct 2909 ATCTCCGAGTTTGATTGGCCTTTCACTCCTACACACAACTCATCCAGAAGCTTTTCAACG 2968 Query 230 CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGAT 289 || | | ||| ||| |||||| | || ||||| | ||||| |||| ||||| ||||| Sbjct 2969 CTTA-TTGGTGCGGGCCTCCATCCCGTGTTACCGGGACTTCACCCTGGCCATGTGTAGAT 3027 Query 290 CACTTCGCTTCGGGTCTTGATCGTGCCACTCAT-ACGCCCTATTCGGACTCGCTTTCGCT 348 |||| | |||| |||| | | | |||||| ||| ||| ||| | ||||||||| || Sbjct 3028 CACTCGGTTTCGCGTCTACCCCATCCGACTCATCACGGCCTGTTCAGCCTCGCTTTCACT 3087 Query 349 ACGGCTACCCCACA---CGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 ||| | | | || | |||||||||| || | | |||||| ||| ||||| | Sbjct 3088 GCGGTTGCGTCTCAGAGAGACTTAACCTCGCCGGAC-ATGGTAACTCGTAGGTTCATTAT 3146 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 |||||||||||||||||| | | ||||| |||||||| | ||| |||| Sbjct 3147 GCAAAAGGCACGCCGTCAC-----ATCAAAAAG------ATGCTCCGACCGCTTGAAGGC 3195 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACG 524 |||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| Sbjct 3196 GTCTGGTTTCAGGGACTGTTTCACTCCCCTAATAGGGGTGCTTTTCACCTTTCCCTCACG 3255 Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGAT 584 ||||| || ||||||||||| || ||||||||||| ||| ||| |||||||| | ||| Sbjct 3256 GTACTGGTTCGCTATCGGTCTCCCGGGAGTATTTAGCCTTGCCGGATGGTCCCGGCGGAT 3315 Query 585 TC 586 || Sbjct 3316 TC 3317 >seq10422 Length=2666 Score = 273 bits (302), Expect = 8e-71 Identities = 410/567 (72%), Gaps = 24/567 (4%) Strand=Plus/Plus Query 29 CTCACAGCCGCGCTCTCACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTG 88 ||||| ||||| | | | || ||||||||||||||||| || |||||| || Sbjct 866 CTCACTCCCGCGGTGGC-CGTCGCGGCATTCGGAGTTTGGCTGGGGTCGGTAGGCGGCGA 924 Query 89 GGCCCCCTAGACCATCCAGTG-CTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAA 147 ||||||| | ||| |||| ||||||||||| || | | | ||||| ||||| ||||| Sbjct 925 AGCCCCCTCGCCCAATCAGTATCTCTACCTCCGCGACGCATCCCGCGAGGCTGCCCCTAA 984 Query 148 ATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACA 207 | ||||||||||||| || ||||||| | || ||||||||||||||||||||| || | Sbjct 985 AGGCATTTCGGGGAGTACGAGCTATCTCTCAGCTTGATTGGCCTTTCACCCCTACCCCAA 1044 Query 208 GGTCATCCCCTCAGTTTTCAAC-CTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCG 266 |||| ||| |||||||| || | ||||||| |||||| ||| | | ||| Sbjct 1045 GGTCGTCCGAAAGCTTTTCAACGCTCA-CCGGTTCGGCCCTCCA-GCGCCTGTCACGGCG 1102 Query 267 -CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACG 325 ||||| ||||||| || |||||| | | |||| ||| | || |||| || Sbjct 1103 CCTTCAGCCTGCCCTGGGGTAGATCGCAAAGTTTCGCGTCCGCCGCCGGCGACTC-CGCG 1161 Query 326 CCCTATTCGGACTCGCTTTCGCTACGGCTAC---CCCACACG-GGTTAACCTCGCGACAC 381 |||| ||||| |||||| ||||| ||| | | || || | | | |||||| | | Sbjct 1162 CCCTCTTCGGGCTCGCTCTCGCTCCGGGTCCGCGCCTCCAGGCGCTCCCCCTCGCCGC-C 1220 Query 382 AACG-CAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGC 440 ||| ||||| ||||||||| | ||||||||||||||||||| || ||||| Sbjct 1221 GACGAGCGACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACC----ACTAAAAAG-- 1274 Query 441 ACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCC-AG 499 |||||||| | ||| |||| || ||||||||| || ||||||||| | || | Sbjct 1275 ----TGGCTCCGACCGCTTGCAGGCGCACGGTTTCAGGGTCTCTTTCACTCCGCTCCTCG 1330 Query 500 GGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTA 559 ||| ||||||||||||||||||||||||| || ||||||||||| | | ||| ||| Sbjct 1331 CGGTGCTTTTCACCTTTCCCTCACGGTACTCGTTCGCTATCGGTCTCACGGTAGTGCTTA 1390 Query 560 GGCTTAACGGGTGGTCCCGCCAGATTC 586 | ||| ||| |||| ||||| | ||| Sbjct 1391 GCCTTGGCGGATGGTGCCGCCTGCTTC 1417 Score = 100 bits (110), Expect = 1e-18 Identities = 115/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 21 CCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTA 80 ||||| ||||| ||||| || || | |||||||||||||||||||| |||| | Sbjct 2516 CCCGCGCCCTCACTCCCGCGGTCG-ACGCCGCGGCATTCGGAGTTTGGTTGGGGTCGGCA 2574 Query 81 AGCTTGTGGGCCCCCTAGACCATCCAGTG-CTCTACCTCCGGGAAGAAACACGCGACGCT 139 || ||||||| | ||||||||| ||||||||||| | | | | ||||| ||| Sbjct 2575 GGCGGCGAAGCCCCCTCGCCCATCCAGTATCTCTACCTCCGCGCCGCATCCCGCGAGGCT 2634 Query 140 GCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 || |||||| ||||||||||||| || ||||| Sbjct 2635 GCCCCTAAAGGCATTTCGGGGAGTACGAGCTA 2666 >seq8765 Length=4561 Score = 273 bits (302), Expect = 8e-71 Identities = 348/467 (75%), Gaps = 29/467 (6%) Strand=Plus/Minus Query 134 GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTT 193 || ||||| |||||| ||||||||| ||| || ||||||| | |||||||||||||||| Sbjct 2316 GAGGCTGCCCCTAAAGGCATTTCGGAGAGTACGAGCTATCTCTCAGTTTGATTGGCCTTT 2257 Query 194 CACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA-CG 252 ||| |||| | || |||||| | |||||||| | ||||||| |||||| | Sbjct 2256 CACTCCTACACGCACCTCATCCAAAAACTTTTCAACGTTTACTGGTTCGGCCCTCCATTG 2197 Query 253 CGGTCTTACCCGCGCTTCAACCTG--CCCATGGATAGATCACTTCGCTTCGGGTCTTGAT 310 |||| ||| | ||||| |||| | |||| ||||||||| | |||| |||| | Sbjct 2196 CGGT-TTAGCGCAACTTCAGCCTGGACGCATG--TAGATCACTAAGTTTCGCGTCTGCCT 2140 Query 311 --CGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC----CCCACACG 364 | || ||||| ||||||| ||| |||||||||||||| ||| | | | || || Sbjct 2139 TACATG--ACTCA-ACGCCCTCTTCAGACTCGCTTTCGCTTCGGTTCCGCGTCTCAAAC- 2084 Query 365 GGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCAC 424 | ||||||| || | | ||| |||||| ||||||||| | |||||||||||||||||| Sbjct 2083 GCTTAACCTTGCCATGC-ACGGCAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCAC 2025 Query 425 CTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTAT 484 | | | | | | |||||||| | ||||| || || |||||||||| || | Sbjct 2024 C---------ACACGTAGT--GGCTCCGACCGCTTGTAAGCGCACGGTTTCAGGTTCTCT 1976 Query 485 TTCACTCCCC-GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGT 543 |||||||||| | ||||| |||||||||||||| |||| |||||||| |||||||||| Sbjct 1975 TTCACTCCCCTGTTCGGGGTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGT 1916 Query 544 CACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 | | |||||||||||| ||| ||| |||| ||||| | |||| || Sbjct 1915 CTCTCAGGAGTATTTAGCCTTGGCGGATGGTGCCGCCTGCTTCAGAC 1869 >seq20578 Length=685 Score = 100 bits (110), Expect = 1e-18 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 54 GCATTCGGAGTTTGGTTGATTTCGGTAAGC-TTGTGGGCCCCCTAGACCATCCAGT-GCT 111 |||||||||||||| | || || | || || | |||| | | || |||| ||| Sbjct 198 GCATTCGGAGTTTGTCAGGATTTGGCAGGCGATGAAGCCCCCGCATCCTAT-CAGTAGCT 140 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||||| | | | | ||| |||| |||||| |||||||||||| || ||||| Sbjct 139 CTACCTCACGCAGCGACCGTCCGAGGCTGTCCCTAAAGACATTTCGGGGAGTACGAGCTA 80 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 || | ||||||||||||||||||| |||| ||||| |||||| | |||||||| Sbjct 79 TCTCCCAGTTTGATTGGCCTTTCACTCCTACCCACAACTCATCCAAGCCCTTTTCAACGG 20 Query 232 AAGTGGGTTCGGTCCTCCA 250 || ||||||| |||||| Sbjct 19 AAACTGGTTCGGGCCTCCA 1 >seq23756 Length=540 Score = 96.9 bits (106), Expect = 1e-17 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 505 CTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTT 564 ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||| ||| Sbjct 540 CTTTTCACCTTTCCCTCACGGTACTA-TGCGCTATCGGTCACTAAGGAGTATTTAGCCTT 482 Query 565 AACGGGTGGTCCC 577 | |||||||||| Sbjct 481 ACGGGGTGGTCCC 469 >seq20009 Length=722 Score = 93.3 bits (102), Expect = 2e-16 Identities = 94/121 (78%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTC 112 ||||||||||||||| | | || ||||||||| ||||||| | ||| |||||||| Sbjct 131 GGCATTCGGAGTTTGATAGTCTTTGGTAAGCTTTGACGCCCCCTCGGACATTCAGTGCTC 72 Query 113 TACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTAT 172 ||||||| || | ||| ||| ||| |||||| ||||||||||||||||||||| Sbjct 71 TACCTCC-ATCAGGATCACACGAGGCTAGCCCTAAAGCTATTTCGGGGAGAACCAGCTAT 13 Query 173 C 173 | Sbjct 12 C 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817146999552