Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq16241 201 3e-49
seq8765 196 1e-47
seq10422 176 1e-41
seq8777 156 1e-35
seq23756 109 1e-21
>seq16241
Length=1089
Score = 201 bits (222), Expect = 3e-49
Identities = 312/424 (74%), Gaps = 25/424 (6%)
Strand=Plus/Minus
Query 4 CCGATCCACAGGTCATTCC-GCTAACTTTTTCAACGGTAGTC-GGTTCGGTCCTCCAGTT 61
|| |||||||| |||| || || |||||||||| | ||| |||||||||||||| |
Sbjct 458 CCTATCCACAGCTCATCCCCGC---CTTTTTCAACAGACGTCTGGTTCGGTCCTCCA-TG 403
Query 62 AGTAGTTAC-CCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTAT 120
| |||| || || ||||||||| |||| |||||| || |||||||| ||||||||
Sbjct 402 GGATTTTACTCCCAC--TTCAACCTGGCCAT-GGATAGGTCACCCGGTTT-CGGGTCTAC 347
Query 121 TTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCTATTCG 177
|| || |||| |||||| | ||||||||||| |||| || |||| ||| ||
Sbjct 346 GTCAT-GCAACTAT-CGCCCTCTTCAGACTCGCTTT-CGCTTCGGCTCCGAACCT--TCA 292
Query 178 GTTA--AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA 235
||| | | | || | || ||| |||| | || || ||||||| ||||| ||
Sbjct 291 GTTCTTAACCTCGCTGCATAACGTAACTCGCCGGTCCGTTCTACAAAAAGTACGAGATCG 232
Query 236 CCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCC 295
|| | ||| || | ||||||||| || | ||||||||| ||| ||||||||||
Sbjct 231 TACATCGC-GTGTACTTTCTCTGCTTGTAAACACAGGGTTTCAGGTTCTCTTTCACTCCC 173
Query 296 CTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTA 355
||| |||||||||||||| ||||||||||||||||||| | | |||||||||| | | |
Sbjct 172 CTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGTACTA-TGCGCTATCGGTCACTGA-TC 116
Query 356 GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCT 415
|||||||| ||||| || |||||||||| ||| || ||||||||| ||| |
Sbjct 115 GTATTTAGGCTTGGGGGGTGGTCCCCCCTGCTTCCCACCGGATTTCTCGTGTCCCGCGGT 56
Query 416 ACTC 419
||||
Sbjct 55 ACTC 52
>seq8765
Length=4561
Score = 196 bits (216), Expect = 1e-47
Identities = 223/295 (76%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTC----GGTTAAGC 184
|||| ||||||| | ||||||||||| |||| || ||| | || | |||| |
Sbjct 2134 GACTCAACGCCCTCTTCAGACTCGCTTT-CGCTTCGGTTCCGCGTCTCAAACGCTTAACC 2076
Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244
|| |||| | || ||| | | |||||| ||||||| |||| |||||| || |
Sbjct 2075 TT-GCCATGCACGGCAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCACACGTA 2017
Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
|||| |||| || ||||||| || ||||||||||| ||| |||||||||||| | ||||
Sbjct 2016 GTGG-CTCCGACCGCTTGTAAGCGCACGGTTTCAGGTTCTCTTTCACTCCCCTGTTCGGG 1958
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| ||||||| |||| ||||| |||| ||||||||| |||| ||||||||||
Sbjct 1957 GTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCTCAGGAGTATTTAGC 1898
Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
||||| ||||||| || || |||||||| || ||| | ||| |||||||
Sbjct 1897 CTTGGCGGATGGTGCCGCCTGCTTCAGACAGGATTCCTCCGGTCCCGCCCTACTC 1843
>seq10422
Length=2666
Score = 176 bits (194), Expect = 1e-41
Identities = 166/209 (79%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 212 CATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGGGCTCCCACTGCTTGTACGCATA 270
|||||| ||||||| |||| |||||| | | ||||||| |||| || ||||| | || |
Sbjct 1240 CATTATGCAAAAGGCACGCCGTCACCACTAAAAAGTGG-CTCCGACCGCTTGCAGGCGCA 1298
Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330
|||||||||| ||| ||||||||| ||| || ||| |||||| ||||||||||||||||
Sbjct 1299 CGGTTTCAGGGTCTCTTTCACTCCGCTCCTCGCGGTGCTTTTCACCTTTCCCTCACGGTA 1358
Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390
|| |||| ||||||||| | ||||| |||||||||| ||||||| || || |||
Sbjct 1359 CTCGTTCGCTATCGGTCTCACGGTAGTGCTTAGCCTTGGCGGATGGTGCCGCCTGCTTCG 1418
Query 391 GACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|||| ||| ||| || ||| |||||||
Sbjct 1419 GACAGGGTTCCTCCGGCCCCGCCCTACTC 1447
>seq8777
Length=4537
Score = 156 bits (172), Expect = 1e-35
Identities = 160/208 (77%), Gaps = 1/208 (0%)
Strand=Plus/Plus
Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271
|||||| ||||||| |||| ||||| | |||| | |||| || ||||| | || |
Sbjct 3141 CATTATGCAAAAGGCACGCCGTCACATCAAAAAGATG-CTCCGACCGCTTGAAGGCGTCT 3199
Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331
||||||||| || |||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 3200 GGTTTCAGGGACTGTTTCACTCCCCTAATAGGGGTGCTTTTCACCTTTCCCTCACGGTAC 3259
Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 391
| |||| ||||||||| | | |||||||||||||| |||||||||| | ||||
Sbjct 3260 TGGTTCGCTATCGGTCTCCCGGGAGTATTTAGCCTTGCCGGATGGTCCCGGCGGATTCGC 3319
Query 392 ACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|| | || ||||||||||| |||||
Sbjct 3320 GCAGAATTACTCGTGCTCCGCGTTACTC 3347
>seq23756
Length=540
Score = 109 bits (120), Expect = 1e-21
Identities = 92/112 (82%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367
|||||| ||||||||||||||||||| | | |||||||||| | || |||||||||||||
Sbjct 540 CTTTTCACCTTTCCCTCACGGTACTA-TGCGCTATCGGTCACTAAGGAGTATTTAGCCTT 482
Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419
|| |||||||| | ||||||||| ||||| |||| ||||||||||
Sbjct 481 ACGGGGTGGTCCCCGCGCGTTCAGACAAGGTTTCACGTGTCTCGTCCTACTC 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241290556032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |