Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq16241 201 3e-49 seq8765 196 1e-47 seq10422 176 1e-41 seq8777 156 1e-35 seq23756 109 1e-21 >seq16241 Length=1089 Score = 201 bits (222), Expect = 3e-49 Identities = 312/424 (74%), Gaps = 25/424 (6%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCC-GCTAACTTTTTCAACGGTAGTC-GGTTCGGTCCTCCAGTT 61 || |||||||| |||| || || |||||||||| | ||| |||||||||||||| | Sbjct 458 CCTATCCACAGCTCATCCCCGC---CTTTTTCAACAGACGTCTGGTTCGGTCCTCCA-TG 403 Query 62 AGTAGTTAC-CCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTAT 120 | |||| || || ||||||||| |||| |||||| || |||||||| |||||||| Sbjct 402 GGATTTTACTCCCAC--TTCAACCTGGCCAT-GGATAGGTCACCCGGTTT-CGGGTCTAC 347 Query 121 TTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC---CCTATTCG 177 || || |||| |||||| | ||||||||||| |||| || |||| ||| || Sbjct 346 GTCAT-GCAACTAT-CGCCCTCTTCAGACTCGCTTT-CGCTTCGGCTCCGAACCT--TCA 292 Query 178 GTTA--AGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA 235 ||| | | | || | || ||| |||| | || || ||||||| ||||| || Sbjct 291 GTTCTTAACCTCGCTGCATAACGTAACTCGCCGGTCCGTTCTACAAAAAGTACGAGATCG 232 Query 236 CCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCC 295 || | ||| || | ||||||||| || | ||||||||| ||| |||||||||| Sbjct 231 TACATCGC-GTGTACTTTCTCTGCTTGTAAACACAGGGTTTCAGGTTCTCTTTCACTCCC 173 Query 296 CTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTA 355 ||| |||||||||||||| ||||||||||||||||||| | | |||||||||| | | | Sbjct 172 CTC-CCGGGGTTCTTTTCACCTTTCCCTCACGGTACTA-TGCGCTATCGGTCACTGA-TC 116 Query 356 GTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCT 415 |||||||| ||||| || |||||||||| ||| || ||||||||| ||| | Sbjct 115 GTATTTAGGCTTGGGGGGTGGTCCCCCCTGCTTCCCACCGGATTTCTCGTGTCCCGCGGT 56 Query 416 ACTC 419 |||| Sbjct 55 ACTC 52 >seq8765 Length=4561 Score = 196 bits (216), Expect = 1e-47 Identities = 223/295 (76%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTC----GGTTAAGC 184 |||| ||||||| | ||||||||||| |||| || ||| | || | |||| | Sbjct 2134 GACTCAACGCCCTCTTCAGACTCGCTTT-CGCTTCGGTTCCGCGTCTCAAACGCTTAACC 2076 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || |||| | || ||| | | |||||| ||||||| |||| |||||| || | Sbjct 2075 TT-GCCATGCACGGCAACTCGTAGGCTCATTATGCAAAAGGCACGCCGTCACCACACGTA 2017 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 |||| |||| || ||||||| || ||||||||||| ||| |||||||||||| | |||| Sbjct 2016 GTGG-CTCCGACCGCTTGTAAGCGCACGGTTTCAGGTTCTCTTTCACTCCCCTGTTCGGG 1958 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||| |||| ||||| |||| ||||||||| |||| |||||||||| Sbjct 1957 GTTCTTTTCACCTTTCCTTCACAGTACTTGTTCGCTATCGGTCTCTCAGGAGTATTTAGC 1898 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||| ||||||| || || |||||||| || ||| | ||| ||||||| Sbjct 1897 CTTGGCGGATGGTGCCGCCTGCTTCAGACAGGATTCCTCCGGTCCCGCCCTACTC 1843 >seq10422 Length=2666 Score = 176 bits (194), Expect = 1e-41 Identities = 166/209 (79%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACC-CAACAAAGTGGGCTCCCACTGCTTGTACGCATA 270 |||||| ||||||| |||| |||||| | | ||||||| |||| || ||||| | || | Sbjct 1240 CATTATGCAAAAGGCACGCCGTCACCACTAAAAAGTGG-CTCCGACCGCTTGCAGGCGCA 1298 Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||||| ||| ||||||||| ||| || ||| |||||| |||||||||||||||| Sbjct 1299 CGGTTTCAGGGTCTCTTTCACTCCGCTCCTCGCGGTGCTTTTCACCTTTCCCTCACGGTA 1358 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCA 390 || |||| ||||||||| | ||||| |||||||||| ||||||| || || ||| Sbjct 1359 CTCGTTCGCTATCGGTCTCACGGTAGTGCTTAGCCTTGGCGGATGGTGCCGCCTGCTTCG 1418 Query 391 GACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||| ||| ||| || ||| ||||||| Sbjct 1419 GACAGGGTTCCTCCGGCCCCGCCCTACTC 1447 >seq8777 Length=4537 Score = 156 bits (172), Expect = 1e-35 Identities = 160/208 (77%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATAC 271 |||||| ||||||| |||| ||||| | |||| | |||| || ||||| | || | Sbjct 3141 CATTATGCAAAAGGCACGCCGTCACATCAAAAAGATG-CTCCGACCGCTTGAAGGCGTCT 3199 Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 ||||||||| || |||||||||||| ||||| |||||| ||||||||||||||||| Sbjct 3200 GGTTTCAGGGACTGTTTCACTCCCCTAATAGGGGTGCTTTTCACCTTTCCCTCACGGTAC 3259 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 391 | |||| ||||||||| | | |||||||||||||| |||||||||| | |||| Sbjct 3260 TGGTTCGCTATCGGTCTCCCGGGAGTATTTAGCCTTGCCGGATGGTCCCGGCGGATTCGC 3319 Query 392 ACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || | || ||||||||||| ||||| Sbjct 3320 GCAGAATTACTCGTGCTCCGCGTTACTC 3347 >seq23756 Length=540 Score = 109 bits (120), Expect = 1e-21 Identities = 92/112 (82%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 |||||| ||||||||||||||||||| | | |||||||||| | || ||||||||||||| Sbjct 540 CTTTTCACCTTTCCCTCACGGTACTA-TGCGCTATCGGTCACTAAGGAGTATTTAGCCTT 482 Query 368 GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || |||||||| | ||||||||| ||||| |||| |||||||||| Sbjct 481 ACGGGGTGGTCCCCGCGCGTTCAGACAAGGTTTCACGTGTCTCGTCCTACTC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241290556032