Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq19390 320 3e-85 seq13431 93.3 8e-17 seq8765 93.3 8e-17 >seq19390 Length=764 Score = 320 bits (354), Expect = 3e-85 Identities = 281/346 (81%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| |||| ||||| |||| ||||||| |||||| ||||||||||||||||||||| Sbjct 404 GGCGTTGCTGGGTCAGGCTTTCGCCCATTGCCCAATATTCCCCACTGCTGCCTCCCGTAG 345 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 344 GAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGAT 285 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 || | ||||||| || ||| | ||||||||| |||||| | |||||||||||||| Sbjct 284 CGCAGCCTTGGTGAGCCGTTACCCCACCAACTAGCTAATCAGATATGAGCCCATCTTTCA 225 Query 181 GC-GATAAAT-CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || ||| | ||||||| | |||||| || |||||||||||||||||| Sbjct 224 GCGGATTGCTCCTTTGGTATCCCGAGGATGCCCTCAAAATACATTATGCGGTATTAGCAG 165 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 |||||||||| ||| | || ||||||||||||||||||||| |||||||||||||| Sbjct 164 TCGTTTCCAACTGTTGTCCCCCTCTGAAAGGCAGGTTGCTCATACATTACTCACCCGTCC 105 Query 299 GCCACTAAGCTATATATCCAGCAAGCTTTCAACATAGCTCCGTTCG 344 ||||||||| || | | |||||||| | | || ||||||||| Sbjct 104 GCCACTAAGTTACAAA---AGCAAGCTCT---CGTAACTCCGTTCG 65 >seq13431 Length=1516 Score = 93.3 bits (102), Expect = 8e-17 Identities = 187/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 45 CTGCTGCCTCCCGTAGGAGTCTGGG-CCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTC 103 ||||||| |||||||| | |||| || |||||||| | || | | || ||| Sbjct 342 CTGCTGCGCCCCGTAGG-GCCTGGAACCTTGTCTCAGGTTCCATCTCCGGGCTCTTGCTC 284 Query 104 TCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGC 163 ||| | ||| |||| | |||||||| || |||| || ||||||||||||||| || Sbjct 283 TCACAACCCGTACAGATCATAGGCTTGGTAAGCCATTACCTAACCAACTACCTAATCTGC 224 Query 164 CGCGAGCCCATCTTTCAGCGATAAATC-TTTGGTCAAAGAATGATGCCATCCTCTGACAT 222 ||| |||||| || |||| ||| | ||| |||| || || ||| ||| Sbjct 223 CGCAGACCCATCCTTAGGCGAAAAAACATTTAAACAAAAAACCATTCCAGGAAAAATCAT 164 Query 223 -TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCAC 281 ||| | |||||||| |||||| | ||||| || || || || ||||| ||| Sbjct 163 CTATCCAGTATTAGCCCCAGTTTCCCAGGGTTATCCCGGTCCTAAGGGTAGGTTATCCAC 104 Query 282 GTGTTACTCACCCGTCCGCCACTAAGCTATAT 313 |||||||| | |||| |||||| || ||| || Sbjct 103 GTGTTACTGAGCCGTACGCCACGAATCTAAAT 72 >seq8765 Length=4561 Score = 93.3 bits (102), Expect = 8e-17 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||| || | |||||| |||||| ||| ||||||||||||||||| Sbjct 91 GGCATGGCTGGGTCAGAATTCCTTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 32 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGG 91 |||||||| |||||||||||| ||| ||||| Sbjct 31 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998151168768