Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq19390 320 3e-85
seq13431 93.3 8e-17
seq8765 93.3 8e-17
>seq19390
Length=764
Score = 320 bits (354), Expect = 3e-85
Identities = 281/346 (81%), Gaps = 8/346 (2%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||||| |||| ||||| |||| ||||||| |||||| |||||||||||||||||||||
Sbjct 404 GGCGTTGCTGGGTCAGGCTTTCGCCCATTGCCCAATATTCCCCACTGCTGCCTCCCGTAG 345
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 344 GAGTCTGGGCCGTATCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACTGAT 285
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
|| | ||||||| || ||| | ||||||||| |||||| | ||||||||||||||
Sbjct 284 CGCAGCCTTGGTGAGCCGTTACCCCACCAACTAGCTAATCAGATATGAGCCCATCTTTCA 225
Query 181 GC-GATAAAT-CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238
|| ||| | ||||||| | |||||| || ||||||||||||||||||
Sbjct 224 GCGGATTGCTCCTTTGGTATCCCGAGGATGCCCTCAAAATACATTATGCGGTATTAGCAG 165
Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298
|||||||||| ||| | || ||||||||||||||||||||| ||||||||||||||
Sbjct 164 TCGTTTCCAACTGTTGTCCCCCTCTGAAAGGCAGGTTGCTCATACATTACTCACCCGTCC 105
Query 299 GCCACTAAGCTATATATCCAGCAAGCTTTCAACATAGCTCCGTTCG 344
||||||||| || | | |||||||| | | || |||||||||
Sbjct 104 GCCACTAAGTTACAAA---AGCAAGCTCT---CGTAACTCCGTTCG 65
>seq13431
Length=1516
Score = 93.3 bits (102), Expect = 8e-17
Identities = 187/272 (69%), Gaps = 4/272 (1%)
Strand=Plus/Minus
Query 45 CTGCTGCCTCCCGTAGGAGTCTGGG-CCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTC 103
||||||| |||||||| | |||| || |||||||| | || | | || |||
Sbjct 342 CTGCTGCGCCCCGTAGG-GCCTGGAACCTTGTCTCAGGTTCCATCTCCGGGCTCTTGCTC 284
Query 104 TCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGC 163
||| | ||| |||| | |||||||| || |||| || ||||||||||||||| ||
Sbjct 283 TCACAACCCGTACAGATCATAGGCTTGGTAAGCCATTACCTAACCAACTACCTAATCTGC 224
Query 164 CGCGAGCCCATCTTTCAGCGATAAATC-TTTGGTCAAAGAATGATGCCATCCTCTGACAT 222
||| |||||| || |||| ||| | ||| |||| || || ||| |||
Sbjct 223 CGCAGACCCATCCTTAGGCGAAAAAACATTTAAACAAAAAACCATTCCAGGAAAAATCAT 164
Query 223 -TATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCAC 281
||| | |||||||| |||||| | ||||| || || || || ||||| |||
Sbjct 163 CTATCCAGTATTAGCCCCAGTTTCCCAGGGTTATCCCGGTCCTAAGGGTAGGTTATCCAC 104
Query 282 GTGTTACTCACCCGTCCGCCACTAAGCTATAT 313
|||||||| | |||| |||||| || ||| ||
Sbjct 103 GTGTTACTGAGCCGTACGCCACGAATCTAAAT 72
>seq8765
Length=4561
Score = 93.3 bits (102), Expect = 8e-17
Identities = 75/91 (82%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||| || | |||||| |||||| ||| |||||||||||||||||
Sbjct 91 GGCATGGCTGGGTCAGAATTCCTTCCATTGCCCAATATTCCCTACTGCTGCCTCCCGTAG 32
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGG 91
|||||||| |||||||||||| ||| |||||
Sbjct 31 GAGTCTGGACCGTGTCTCAGTTCCAGTGTGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998151168768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |