Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq18192 251 2e-64
seq20009 230 5e-58
seq16241 188 2e-45
seq8777 100 7e-19
seq10422 95.1 3e-17
seq8765 87.8 4e-15
>seq18192
Length=863
Score = 251 bits (278), Expect = 2e-64
Identities = 299/399 (75%), Gaps = 5/399 (1%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||| |||| || ||| |||| ||| ||| | ||
Sbjct 519 CGACTACGCCTCGCGGCCTCGCCTTAGCTCCCGGCTTACCTTGGGCGGACGAACCTTCCC 460
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120
| ||| |||| ||| ||||| ||||||||| | |||||||||| || |
Sbjct 459 CAAGAAACCTTAGATTTTCGGCCATTATGATTCCCACATAATTCTCGCTACTCATTCCGG 400
Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180
|||||||||||| || | |||| ||| || | | ||||||| | | ||||
Sbjct 399 CATTCTCACTCGAATACAGTCCA-CACGTGCTCTCGCTCGTACTTCACCCCGTATTCGAC 341
Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240
||||||||||| | ||| ||| ||| |||||||| ||| | ||||||| ||
Sbjct 340 GCTCCCCTACCAAGTCACTAGAGTTCCCA-AGCTTCGG-TTATATGCTTAGCCCCGTTAT 283
Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTG 299
||| || |||| || ||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 282 ATTTTCCGCGCAGAGTCACTCGACCAGTGAGCTATTACGCACTCTTTTAATGAGTGGCTG 223
Query 300 CTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCA 359
| || |||||||| |||||||||| | ||||||||||||| ||| ||||| || |
Sbjct 222 CCTCTAAGCCAACATCCTGGTTGTTTTTGCAACTCCACATCGTTTTCCACTTAG-CGTAT 164
Query 360 CTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
||| ||| ||||||||| | ||||||||||||||||||
Sbjct 163 CTTTGGGACCTTAGCTGTGGGTCTGGGCTGTTTCCCTCT 125
>seq20009
Length=722
Score = 230 bits (254), Expect = 5e-58
Identities = 303/404 (75%), Gaps = 17/404 (4%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|| |||||||| |||||||||||||||| ||||||| |||||||||||| | ||| |||
Sbjct 578 CGGCTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACC 519
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCA-CACGCTACTCATGCCT 119
|||||| ||||||||| ||||| |||||| |||| ||| | |||||||||| ||
Sbjct 518 CTGGAAACCTTGGATATTCGGCCTGAAGGATTCTCACCT-TCATCTCGCTACTCATTCCG 460
Query 120 GCATTCTCACTCGCATCA-ACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA-C 177
|||||||| || ||| | | ||||| | | | || | ||||| | | | || |
Sbjct 459 GCATTCTCTCTT-CATGACAGTCCACGGCTCCTT-ACGGTACCGCTTCTGCCC-GTCATC 403
Query 178 GACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234
| ||||||||||| | | ||| | || |||||||| | || |||||
Sbjct 402 AATGCTCCCCTACCAATGTATTTGACA---TTCCTGAGCTTCGGTGTCGTGTTTCAGCCC 346
Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA- 293
|| ||||| ||||||| | | | || ||| |||||||||||||||||||||| || |
Sbjct 345 CGG-ACATTTTCGGCGCAGGACCTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTG 287
Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353
|||||||||| ||||||| |||| ||||||| | || ||||||||||| ||||| |
Sbjct 286 TGGCTGCTTCTGAGCCAACATCCTAGTTGTCTTTGAAATCCCACATCCTTTTCCACTTAA 227
Query 354 TCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
||| ||||| ||| ||||||||| | ||||||||||||||||
Sbjct 226 -CACGCACTTTGGGACCTTAGCTGTAGGTCTGGGCTGTTTCCCT 184
>seq16241
Length=1089
Score = 188 bits (208), Expect = 2e-45
Identities = 286/400 (72%), Gaps = 8/400 (2%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|| ||||| || || ||||| |||||| ||||||| |||| ||| || ||| | ||
Sbjct 1052 CGCCTACGACTTCCGTCCTCGGCTTAGGTCCCGACTTACCCTGGGTGGATGAACCTTCCC 993
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120
| |||| |||||| ||| ||| | ||| | | | | |||||||||| || |
Sbjct 992 CAGGAAACCTTGGGCTTTCGACGGCGAAGTTTCTCGCTTCGCTCTCGCTACTCATACCGG 933
Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180
||||||| || | || | |||||| | || | | |||||| | | | || ||
Sbjct 932 CATTCTCTCTTGTATACAGTCCACCGTGCC-TCTCGATACGGCTTCAGCCCGTATACAAC 874
Query 181 GCTCCCCTACCCAAC-CACACAGGTTGCCACAGCTTCGGCGGATAAC--TTAAGCCCCGC 237
||||| ||||| | | | | ||| ||||||| | | || || |||||||
Sbjct 873 GCTCCTCTACCACGCGCTTGCGCGCATCCATCGCTTCGGTG--TCACGTTTTAGCCCCGG 816
Query 238 TACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGG 296
||||| ||||||| || |||| |||||||||||||||||||||||||| || | |||
Sbjct 815 -ACATTTTCGGCGCACAACCACTCGACCAGTGAGCTATTACGCACTCTTTAAATGTGTGG 757
Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356
||||||| ||||||| |||||||||||| |||| ||||||||||| ||||| |
Sbjct 756 CTGCTTCTGAGCCAACATCCTGGTTGTCTGTGCAATTCCACATCCTTCTCCACTTAACGT 697
Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396
||||| ||| ||||||| | ||||||||| |||| ||||
Sbjct 696 GCACTTTGGGACCTTAGCGGTTGATCTGGGGTGTTCCCCT 657
>seq8777
Length=4537
Score = 100 bits (110), Expect = 7e-19
Identities = 222/327 (68%), Gaps = 12/327 (4%)
Strand=Plus/Plus
Query 7 CGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAA 66
|||| ||||| | ||||||||||||||||||| |||| || ||| | ||| ||||
Sbjct 2340 CGCCGTTCGGCTTATGCTTAGGACCCGACTCACCCCGGGCTGAACAACATCGCCCGGGAA 2399
Query 67 CCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTC 125
|||| | ||||||| ||| || ||||| | | || |||| || ||| ||||
Sbjct 2400 ACCTTAGTCTTTCGGCGGGAGGGTATCTCACCCTCCTTATCGTTACTTATACCTACATTT 2459
Query 126 TCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTCC 185
| | ||| ||||||| | ||| || || |||||| | | || | |||||
Sbjct 2460 GCTTTTCCATACGCTCCACCGCGG-GTCGTCCCGCGGCTTCAACGCAGATGGAATGCTCC 2518
Query 186 CCTACCCAACC-----ACACAGGTTG--CCACAGCTTCGGCGGATAACTTAAGCCCCGCT 238
|||||| | | | | | | | || | |||||| | | |||| ||| |
Sbjct 2519 CCTACCGATACTTTCTAAATATGCTATCCCGCGCCTTCGGTGTCTGCCTTATACCCGATT 2578
Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGC 297
| ||||| ||| || || ||| |||||||| ||||||||||||| || || ||||
Sbjct 2579 A--TTATCCACGCACGGTCTCTCGACTAGTGAGCTGTTACGCACTCTTTGAATGAATGGC 2636
Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTC 324
||||||||||||||| |||| | ||||
Sbjct 2637 TGCTTCCAAGCCAACATCCTAGCTGTC 2663
>seq10422
Length=2666
Score = 95.1 bits (104), Expect = 3e-17
Identities = 260/386 (67%), Gaps = 12/386 (3%)
Strand=Plus/Plus
Query 22 CCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCTGGAACCCTTGGATAATCG 80
||||||| ||||||| |||| | | || | | |||| | ||||||||||| ||
Sbjct 461 CCTTAGGCCCCGACTGACCCTGATCCGATTAGCGTTGATCA-GGAACCCTTGGTCTTCCG 519
Query 81 GCGGACGGGATTCCCACCCGTCACA--CGCTACTCATGCCTGCATTCTCACTCGCATCAA 138
| | |||| ||| |||||| || || ||||||||||| |||| | | | |
Sbjct 520 GTGTGCGGGTTTCGCACCCG-CATTGTCGTTACTCATGCCTACATTTGCTTTTCCGCCCG 578
Query 139 CTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC-GCTCCCCTACCCAACCA 197
||||||| | | || | ||| ||||| | ||| || ||||||||||| | |
Sbjct 579 CTCCACCGCCCC-TCGCGAGGCGGCTTCCGCGCTGGGCGGAATGCTCCCCTACCGATGCT 637
Query 198 CACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATC 257
| | | | || ||||||||| ||| | |||| | ||||||| | | |
Sbjct 638 CTC-GCATCCCTTGTCTTCGGCGGCGCGCTTCATGCCCGTT-CATTATCCACACCCGCCC 695
Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCC 316
|| ||| ||||||| ||||||||||||| || || ||||||||||||||||||| |||
Sbjct 696 GCTCGACTGGTGAGCTGTTACGCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCC 755
Query 317 TGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGC 374
| ||||| ||| || || || | | ||| || ||||| |||||||| |
Sbjct 756 CAGCTGTCTCAGCAGGCGGACCTCGTTAGTTCAACTTAGCGCGCACTTGGGGGCCTTGGA 815
Query 375 TGATGATCTGGGCTGTTTCCCTCTCG 400
|| | || ||| | |||||||||||
Sbjct 816 CGAAGGTCCGGGTTCTTTCCCTCTCG 841
Score = 78.8 bits (86), Expect = 2e-12
Identities = 96/129 (74%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 275 TTACGCACTCTTTCAA-GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT 333
||||||||||||| || |||||||||||||||||||||| ||| | ||||| |||
Sbjct 2371 TTACGCACTCTTTGAACGGATGGCTGCTTCCAAGCCAACGTCCCAGCTGTCTGTGCAGGC 2430
Query 334 CCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391
|| || || | ||| || | | ||| |||||||| || | || || ||| | ||
Sbjct 2431 GGACCTCGTTAGCGCAACTTAGGCGGCCCTTGGGGGCCTTGGCCGGTGGTCCGGGTTCTT 2490
Query 392 TCCCTCTCG 400
|||||||||
Sbjct 2491 TCCCTCTCG 2499
>seq8765
Length=4561
Score = 87.8 bits (96), Expect = 4e-15
Identities = 110/149 (74%), Gaps = 4/149 (3%)
Strand=Plus/Minus
Query 256 TCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCT 314
||||| || |||||||| ||||||||||||| || || ||||||||||||||||||| |
Sbjct 2595 TCACTCTACTAGTGAGCTGTTACGCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACAT 2536
Query 315 CCTGGTTGTCTACGCAACTCCACATCCTTT---CCCACTGAGTCACCACTTAGGGGCCTT 371
||| | ||||| ||||| || | ||| | ||| | | | ||| ||||
Sbjct 2535 CCTAGCTGTCTGTGCAACGGGACGCCGTTTTTCTCAACTTAACGCGGATTCTGGGACCTT 2476
Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400
| | |||| |||||| |||| ||||||||
Sbjct 2475 AACCGATGGTCTGGGTTGTTCCCCTCTCG 2447
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177306506752
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