Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq18192 251 2e-64 seq20009 230 5e-58 seq16241 188 2e-45 seq8777 100 7e-19 seq10422 95.1 3e-17 seq8765 87.8 4e-15 >seq18192 Length=863 Score = 251 bits (278), Expect = 2e-64 Identities = 299/399 (75%), Gaps = 5/399 (1%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||| |||| || ||| |||| ||| ||| | || Sbjct 519 CGACTACGCCTCGCGGCCTCGCCTTAGCTCCCGGCTTACCTTGGGCGGACGAACCTTCCC 460 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | ||| |||| ||| ||||| ||||||||| | |||||||||| || | Sbjct 459 CAAGAAACCTTAGATTTTCGGCCATTATGATTCCCACATAATTCTCGCTACTCATTCCGG 400 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| || | |||| ||| || | | ||||||| | | |||| Sbjct 399 CATTCTCACTCGAATACAGTCCA-CACGTGCTCTCGCTCGTACTTCACCCCGTATTCGAC 341 Query 181 GCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTAC 240 ||||||||||| | ||| ||| ||| |||||||| ||| | ||||||| || Sbjct 340 GCTCCCCTACCAAGTCACTAGAGTTCCCA-AGCTTCGG-TTATATGCTTAGCCCCGTTAT 283 Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTG 299 ||| || |||| || ||||| |||||||||||||||||||||||||| || || |||||| Sbjct 282 ATTTTCCGCGCAGAGTCACTCGACCAGTGAGCTATTACGCACTCTTTTAATGAGTGGCTG 223 Query 300 CTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCA 359 | || |||||||| |||||||||| | ||||||||||||| ||| ||||| || | Sbjct 222 CCTCTAAGCCAACATCCTGGTTGTTTTTGCAACTCCACATCGTTTTCCACTTAG-CGTAT 164 Query 360 CTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 ||| ||| ||||||||| | |||||||||||||||||| Sbjct 163 CTTTGGGACCTTAGCTGTGGGTCTGGGCTGTTTCCCTCT 125 >seq20009 Length=722 Score = 230 bits (254), Expect = 5e-58 Identities = 303/404 (75%), Gaps = 17/404 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||| |||||||||||||||| ||||||| |||||||||||| | ||| ||| Sbjct 578 CGGCTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATCAGCTTTACC 519 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCA-CACGCTACTCATGCCT 119 |||||| ||||||||| ||||| |||||| |||| ||| | |||||||||| || Sbjct 518 CTGGAAACCTTGGATATTCGGCCTGAAGGATTCTCACCT-TCATCTCGCTACTCATTCCG 460 Query 120 GCATTCTCACTCGCATCA-ACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACA-C 177 |||||||| || ||| | | ||||| | | | || | ||||| | | | || | Sbjct 459 GCATTCTCTCTT-CATGACAGTCCACGGCTCCTT-ACGGTACCGCTTCTGCCC-GTCATC 403 Query 178 GACGCTCCCCTACCCAACCAC---ACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCC 234 | ||||||||||| | | ||| | || |||||||| | || ||||| Sbjct 402 AATGCTCCCCTACCAATGTATTTGACA---TTCCTGAGCTTCGGTGTCGTGTTTCAGCCC 346 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA- 293 || ||||| ||||||| | | | || ||| |||||||||||||||||||||| || | Sbjct 345 CGG-ACATTTTCGGCGCAGGACCTCTCGACTAGTGAGCTATTACGCACTCTTTGAATGTG 287 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||| |||| ||||||| | || ||||||||||| ||||| | Sbjct 286 TGGCTGCTTCTGAGCCAACATCCTAGTTGTCTTTGAAATCCCACATCCTTTTCCACTTAA 227 Query 354 TCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||| ||||| ||| ||||||||| | |||||||||||||||| Sbjct 226 -CACGCACTTTGGGACCTTAGCTGTAGGTCTGGGCTGTTTCCCT 184 >seq16241 Length=1089 Score = 188 bits (208), Expect = 2e-45 Identities = 286/400 (72%), Gaps = 8/400 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || ||||| || || ||||| |||||| ||||||| |||| ||| || ||| | || Sbjct 1052 CGCCTACGACTTCCGTCCTCGGCTTAGGTCCCGACTTACCCTGGGTGGATGAACCTTCCC 993 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||||| ||| ||| | ||| | | | | |||||||||| || | Sbjct 992 CAGGAAACCTTGGGCTTTCGACGGCGAAGTTTCTCGCTTCGCTCTCGCTACTCATACCGG 933 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 ||||||| || | || | |||||| | || | | |||||| | | | || || Sbjct 932 CATTCTCTCTTGTATACAGTCCACCGTGCC-TCTCGATACGGCTTCAGCCCGTATACAAC 874 Query 181 GCTCCCCTACCCAAC-CACACAGGTTGCCACAGCTTCGGCGGATAAC--TTAAGCCCCGC 237 ||||| ||||| | | | | ||| ||||||| | | || || ||||||| Sbjct 873 GCTCCTCTACCACGCGCTTGCGCGCATCCATCGCTTCGGTG--TCACGTTTTAGCCCCGG 816 Query 238 TACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGG 296 ||||| ||||||| || |||| |||||||||||||||||||||||||| || | ||| Sbjct 815 -ACATTTTCGGCGCACAACCACTCGACCAGTGAGCTATTACGCACTCTTTAAATGTGTGG 757 Query 297 CTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCA 356 ||||||| ||||||| |||||||||||| |||| ||||||||||| ||||| | Sbjct 756 CTGCTTCTGAGCCAACATCCTGGTTGTCTGTGCAATTCCACATCCTTCTCCACTTAACGT 697 Query 357 CCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||||| ||| ||||||| | ||||||||| |||| |||| Sbjct 696 GCACTTTGGGACCTTAGCGGTTGATCTGGGGTGTTCCCCT 657 >seq8777 Length=4537 Score = 100 bits (110), Expect = 7e-19 Identities = 222/327 (68%), Gaps = 12/327 (4%) Strand=Plus/Plus Query 7 CGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACCCTGGAA 66 |||| ||||| | ||||||||||||||||||| |||| || ||| | ||| |||| Sbjct 2340 CGCCGTTCGGCTTATGCTTAGGACCCGACTCACCCCGGGCTGAACAACATCGCCCGGGAA 2399 Query 67 CCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCTGCATTC 125 |||| | ||||||| ||| || ||||| | | || |||| || ||| |||| Sbjct 2400 ACCTTAGTCTTTCGGCGGGAGGGTATCTCACCCTCCTTATCGTTACTTATACCTACATTT 2459 Query 126 TCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGACGCTCC 185 | | ||| ||||||| | ||| || || |||||| | | || | ||||| Sbjct 2460 GCTTTTCCATACGCTCCACCGCGG-GTCGTCCCGCGGCTTCAACGCAGATGGAATGCTCC 2518 Query 186 CCTACCCAACC-----ACACAGGTTG--CCACAGCTTCGGCGGATAACTTAAGCCCCGCT 238 |||||| | | | | | | | || | |||||| | | |||| ||| | Sbjct 2519 CCTACCGATACTTTCTAAATATGCTATCCCGCGCCTTCGGTGTCTGCCTTATACCCGATT 2578 Query 239 ACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGC 297 | ||||| ||| || || ||| |||||||| ||||||||||||| || || |||| Sbjct 2579 A--TTATCCACGCACGGTCTCTCGACTAGTGAGCTGTTACGCACTCTTTGAATGAATGGC 2636 Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTC 324 ||||||||||||||| |||| | |||| Sbjct 2637 TGCTTCCAAGCCAACATCCTAGCTGTC 2663 >seq10422 Length=2666 Score = 95.1 bits (104), Expect = 3e-17 Identities = 260/386 (67%), Gaps = 12/386 (3%) Strand=Plus/Plus Query 22 CCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGACCCTGGAACCCTTGGATAATCG 80 ||||||| ||||||| |||| | | || | | |||| | ||||||||||| || Sbjct 461 CCTTAGGCCCCGACTGACCCTGATCCGATTAGCGTTGATCA-GGAACCCTTGGTCTTCCG 519 Query 81 GCGGACGGGATTCCCACCCGTCACA--CGCTACTCATGCCTGCATTCTCACTCGCATCAA 138 | | |||| ||| |||||| || || ||||||||||| |||| | | | | Sbjct 520 GTGTGCGGGTTTCGCACCCG-CATTGTCGTTACTCATGCCTACATTTGCTTTTCCGCCCG 578 Query 139 CTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC-GCTCCCCTACCCAACCA 197 ||||||| | | || | ||| ||||| | ||| || ||||||||||| | | Sbjct 579 CTCCACCGCCCC-TCGCGAGGCGGCTTCCGCGCTGGGCGGAATGCTCCCCTACCGATGCT 637 Query 198 CACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATC 257 | | | | || ||||||||| ||| | |||| | ||||||| | | | Sbjct 638 CTC-GCATCCCTTGTCTTCGGCGGCGCGCTTCATGCCCGTT-CATTATCCACACCCGCCC 695 Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCTCC 316 || ||| ||||||| ||||||||||||| || || ||||||||||||||||||| ||| Sbjct 696 GCTCGACTGGTGAGCTGTTACGCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACATCC 755 Query 317 TGGTTGTCTACGCAACTCCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGC 374 | ||||| ||| || || || | | ||| || ||||| |||||||| | Sbjct 756 CAGCTGTCTCAGCAGGCGGACCTCGTTAGTTCAACTTAGCGCGCACTTGGGGGCCTTGGA 815 Query 375 TGATGATCTGGGCTGTTTCCCTCTCG 400 || | || ||| | ||||||||||| Sbjct 816 CGAAGGTCCGGGTTCTTTCCCTCTCG 841 Score = 78.8 bits (86), Expect = 2e-12 Identities = 96/129 (74%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 275 TTACGCACTCTTTCAA-GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACT 333 ||||||||||||| || |||||||||||||||||||||| ||| | ||||| ||| Sbjct 2371 TTACGCACTCTTTGAACGGATGGCTGCTTCCAAGCCAACGTCCCAGCTGTCTGTGCAGGC 2430 Query 334 CCACATCCTT--TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 || || || | ||| || | | ||| |||||||| || | || || ||| | || Sbjct 2431 GGACCTCGTTAGCGCAACTTAGGCGGCCCTTGGGGGCCTTGGCCGGTGGTCCGGGTTCTT 2490 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 2491 TCCCTCTCG 2499 >seq8765 Length=4561 Score = 87.8 bits (96), Expect = 4e-15 Identities = 110/149 (74%), Gaps = 4/149 (3%) Strand=Plus/Minus Query 256 TCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA-TGGCTGCTTCCAAGCCAACCT 314 ||||| || |||||||| ||||||||||||| || || ||||||||||||||||||| | Sbjct 2595 TCACTCTACTAGTGAGCTGTTACGCACTCTTTGAATGAATGGCTGCTTCCAAGCCAACAT 2536 Query 315 CCTGGTTGTCTACGCAACTCCACATCCTTT---CCCACTGAGTCACCACTTAGGGGCCTT 371 ||| | ||||| ||||| || | ||| | ||| | | | ||| |||| Sbjct 2535 CCTAGCTGTCTGTGCAACGGGACGCCGTTTTTCTCAACTTAACGCGGATTCTGGGACCTT 2476 Query 372 AGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | |||| |||||| |||| |||||||| Sbjct 2475 AACCGATGGTCTGGGTTGTTCCCCTCTCG 2447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177306506752