Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq19390 412 6e-113 seq20041 181 2e-43 seq8765 178 2e-42 seq13431 78.8 2e-12 >seq19390 Length=764 Score = 412 bits (456), Expect = 6e-113 Identities = 266/290 (92%), Gaps = 1/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| Sbjct 755 CCCACGCTTTCGCGCCTCAGCGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGT 696 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||||||| ||||||||| || |||||||||||| Sbjct 695 TCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCAC 636 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 ||||||||||||||||||||||||| | |||||||||| | |||||||||||||| Sbjct 635 TCAAGAAAAACAGTTTCAAATGCAGTTCCGGAGTTGAGCCCAGGGATTTCACATCTGACT 576 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 || | |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 575 TG-CATCCCGCCTACGCGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG 517 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 516 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCATGAGGTA 467 >seq20041 Length=719 Score = 181 bits (200), Expect = 2e-43 Identities = 209/279 (75%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| | |||||| ||||||||||| | | | |||||| | |||||||||| ||||| Sbjct 386 CCCGCACTTTCGAGCCTCAGCGTCGATGAGTCCCCAGCAGGCTGCCTTCGCCATCGGTGT 327 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || ||| || |||||||||| ||||||||||| ||||||||| |||| || | | Sbjct 326 TCTTCCTGATCTCTACGCATTCCACCGCTACACCAGGAATTCCGCCTGCCCCTGAACTAT 267 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCAC-ATCTGAC 179 ||||||| ||||| | |||||| |||||| |||| | || || ||| | | Sbjct 266 CCAAGAAATCCAGTTCGGACTGCAGGTCCGGGGTTGGGCCCCGGGATTGTACAATCCG-C 208 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 ||| | |||||||| | |||||||| |||| | | |||| | ||||||||| || | Sbjct 207 TTGAATCTCCGCCTACGCTCCCTTTACGCCCAGTGATTCCGAACAACGCTTGCACCCCTC 148 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 ||||||||||||||||||||||| |||| |||| |||| Sbjct 147 GTATTACCGCGGCTGCTGGCACGAAGTTTGCCGGTGCTT 109 >seq8765 Length=4561 Score = 178 bits (196), Expect = 2e-42 Identities = 211/284 (74%), Gaps = 4/284 (1%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | |||||||||| | | | | | | |||| | | ||||| Sbjct 460 CCCACGCTTTCGTGCATGAGCGTCAGTTGCGAACTCGTGACCTGACTTCTCGATCGGTGT 401 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATT--GCCTCTCCAGC 118 || ||||||| |||||||||||||||||| |||||| |||| || || Sbjct 400 TCTGTGACATATCTAAGCATTTCACCGCTACACATCACATTCCGGCCACGCCTATC--GC 343 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 |||| || |||| |||| ||| | | | ||||||||| | ||||||| |||| Sbjct 342 ACTCTAGTCCGCCAGTATCAAGGGCACGATTGGAGTTGAGCCCCAACTTTTCACCCCTGA 283 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| | |||||| | | ||||||| ||||||||||||||||||||||||| ||| Sbjct 282 CTTAACGGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGTATCCTC 223 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||||| ||||||||| ||||||| Sbjct 222 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATACTTATTC 179 >seq13431 Length=1516 Score = 78.8 bits (86), Expect = 2e-12 Identities = 177/260 (68%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | ||||| | ||||||||||||| |||| ||||| Sbjct 714 GCTTTCGTCCCTCACCGTCAGGTTCGTTCCAGTTAGCCGCCTTCGCCACAGGTGGTCCTC 655 Query 66 CGTATATCTAC-GCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAA 124 | || ||| | |||||||| |||| | ||| | ||| | ||||||| | ||||| Sbjct 654 CCAGGAT-TACAGAATTTCACCTCTACCCTGGGAGTACCGCTAACCTCTCCCGACCTCAA 596 Query 125 GAAAAACAGTTTCAAATGC-AGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183 | |||||| ||| || | | ||| ||| | |||||| |||||| Sbjct 595 GTTCAACAGTATCACCAGCAATTCCCACAGTTAAGCTACAGGATTTCACCAGTGACTTAT 536 Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC--GT 241 | ||| |||| | ||||| ||||||||| | | || | || | | || | || Sbjct 535 CAAACCGGCTACGAACGCTTTAGGCCCAATAAAAACAGCTACCACTAG--AGCTGCCGGT 478 Query 242 ATTACCGCGGCTGCTGGCAC 261 |||||||||| |||||||| Sbjct 477 GTTACCGCGGCGGCTGGCAC 458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828599893233