Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq19390 412 6e-113
seq20041 181 2e-43
seq8765 178 2e-42
seq13431 78.8 2e-12
>seq19390
Length=764
Score = 412 bits (456), Expect = 6e-113
Identities = 266/290 (92%), Gaps = 1/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 755 CCCACGCTTTCGCGCCTCAGCGTCAGTTACAGTCCAGTAAGCCGCCTTCGCCACTGGTGT 696
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| ||||||||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 695 TCCTCCTAATATCTACGCATTTCACCGCTACACTAGGAATTCCGCTTACCTCTCCAGCAC 636
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
||||||||||||||||||||||||| | |||||||||| | ||||||||||||||
Sbjct 635 TCAAGAAAAACAGTTTCAAATGCAGTTCCGGAGTTGAGCCCAGGGATTTCACATCTGACT 576
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
|| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 575 TG-CATCCCGCCTACGCGCCCTTTACACCCAGTAAATCCGGATAACGCTTGCCACCTACG 517
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 516 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCATGAGGTA 467
>seq20041
Length=719
Score = 181 bits (200), Expect = 2e-43
Identities = 209/279 (75%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||| | |||||| ||||||||||| | | | |||||| | |||||||||| |||||
Sbjct 386 CCCGCACTTTCGAGCCTCAGCGTCGATGAGTCCCCAGCAGGCTGCCTTCGCCATCGGTGT 327
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| ||| || |||||||||| ||||||||||| ||||||||| |||| || | |
Sbjct 326 TCTTCCTGATCTCTACGCATTCCACCGCTACACCAGGAATTCCGCCTGCCCCTGAACTAT 267
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCAC-ATCTGAC 179
||||||| ||||| | |||||| |||||| |||| | || || ||| | |
Sbjct 266 CCAAGAAATCCAGTTCGGACTGCAGGTCCGGGGTTGGGCCCCGGGATTGTACAATCCG-C 208
Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239
||| | |||||||| | |||||||| |||| | | |||| | ||||||||| || |
Sbjct 207 TTGAATCTCCGCCTACGCTCCCTTTACGCCCAGTGATTCCGAACAACGCTTGCACCCCTC 148
Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278
||||||||||||||||||||||| |||| |||| ||||
Sbjct 147 GTATTACCGCGGCTGCTGGCACGAAGTTTGCCGGTGCTT 109
>seq8765
Length=4561
Score = 178 bits (196), Expect = 2e-42
Identities = 211/284 (74%), Gaps = 4/284 (1%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||||||| || | |||||||||| | | | | | | |||| | | |||||
Sbjct 460 CCCACGCTTTCGTGCATGAGCGTCAGTTGCGAACTCGTGACCTGACTTCTCGATCGGTGT 401
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATT--GCCTCTCCAGC 118
|| ||||||| |||||||||||||||||| |||||| |||| || ||
Sbjct 400 TCTGTGACATATCTAAGCATTTCACCGCTACACATCACATTCCGGCCACGCCTATC--GC 343
Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178
|||| || |||| |||| ||| | | | ||||||||| | ||||||| ||||
Sbjct 342 ACTCTAGTCCGCCAGTATCAAGGGCACGATTGGAGTTGAGCCCCAACTTTTCACCCCTGA 283
Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238
||| | |||||| | | ||||||| ||||||||||||||||||||||||| |||
Sbjct 282 CTTAACGGTCCGCCTGCGCACCCTTTAAACCCAATAAATCCGGATAACGCTTGTATCCTC 223
Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
|||||||||||||||||||||||| ||||||||| |||||||
Sbjct 222 CGTATTACCGCGGCTGCTGGCACGGAGTTAGCCGATACTTATTC 179
>seq13431
Length=1516
Score = 78.8 bits (86), Expect = 2e-12
Identities = 177/260 (68%), Gaps = 7/260 (3%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
||||||| ||||| |||||| | | ||||| | ||||||||||||| |||| |||||
Sbjct 714 GCTTTCGTCCCTCACCGTCAGGTTCGTTCCAGTTAGCCGCCTTCGCCACAGGTGGTCCTC 655
Query 66 CGTATATCTAC-GCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAA 124
| || ||| | |||||||| |||| | ||| | ||| | ||||||| | |||||
Sbjct 654 CCAGGAT-TACAGAATTTCACCTCTACCCTGGGAGTACCGCTAACCTCTCCCGACCTCAA 596
Query 125 GAAAAACAGTTTCAAATGC-AGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGC 183
| |||||| ||| || | | ||| ||| | |||||| ||||||
Sbjct 595 GTTCAACAGTATCACCAGCAATTCCCACAGTTAAGCTACAGGATTTCACCAGTGACTTAT 536
Query 184 CTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC--GT 241
| ||| |||| | ||||| ||||||||| | | || | || | | || | ||
Sbjct 535 CAAACCGGCTACGAACGCTTTAGGCCCAATAAAAACAGCTACCACTAG--AGCTGCCGGT 478
Query 242 ATTACCGCGGCTGCTGGCAC 261
|||||||||| ||||||||
Sbjct 477 GTTACCGCGGCGGCTGGCAC 458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828599893233
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |