Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq16320 113 3e-23 seq8777 87.8 1e-15 seq8765 87.8 1e-15 >seq16320 Length=1081 Score = 113 bits (124), Expect = 3e-23 Identities = 98/119 (82%), Gaps = 2/119 (2%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||| ||||||||||| | || ||||||||||||| |||| Sbjct 368 TACCTTTTATCCTTTGAGCGACGGCCCTTCCATGCGGTACCGCCGGATCACTATGCCCTG 309 Query 61 CTTTCGCATCTGCTCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||||| ||| | |||| ||| |||||| |||||| | ||| |||||||||||| Sbjct 308 CTTTCGCACCTGTCCGGCTTGTCTGC-CTCGCAGTCAAGCCCCCTTCTGCCATTGCACT 251 >seq8777 Length=4537 Score = 87.8 bits (96), Expect = 1e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||||| || ||||||| | | || ||||||||||||| || Sbjct 1293 TACCTTTTATCCTTTGAGCGACGGAGCTTCCATACGCATCCGCCGGATCACTATGCCCCA 1352 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| |||||| | ||| | ||| || |||||| | ||| |||||||||||| Sbjct 1353 GTTTCCTGCCTGCTCGGGATGTCTCCCTCCCAGTCAAGCGCCCTTATGCCATTGCACT 1410 >seq8765 Length=4561 Score = 87.8 bits (96), Expect = 1e-15 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||| |||||| | |||| ||||| | || | ||||||||| | ||| Sbjct 3889 TACCTTTTATCCATTGAGCAACGGCCTTTCCACGCTGTACCGCGGGATCACTAAGCCCTA 3830 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | ||| ||||||| |||||| | ||| |||| ||| || | Sbjct 3829 CTTTCGTACCTGCTCGACGTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTGTGCTCT 3770 Query 121 CACTACGATTTCCGACCG 138 ||||||||||||| Sbjct 3769 GCGCGCGATTTCCGACCG 3752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351917754100