Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq16320 113 3e-23
seq8777 87.8 1e-15
seq8765 87.8 1e-15
>seq16320
Length=1081
Score = 113 bits (124), Expect = 3e-23
Identities = 98/119 (82%), Gaps = 2/119 (2%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||| ||||||||||| | || ||||||||||||| ||||
Sbjct 368 TACCTTTTATCCTTTGAGCGACGGCCCTTCCATGCGGTACCGCCGGATCACTATGCCCTG 309
Query 61 CTTTCGCATCTGCTCTAGTTGT-TGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||||| ||| | |||| ||| |||||| |||||| | ||| ||||||||||||
Sbjct 308 CTTTCGCACCTGTCCGGCTTGTCTGC-CTCGCAGTCAAGCCCCCTTCTGCCATTGCACT 251
>seq8777
Length=4537
Score = 87.8 bits (96), Expect = 1e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||||| || ||||||| | | || ||||||||||||| ||
Sbjct 1293 TACCTTTTATCCTTTGAGCGACGGAGCTTCCATACGCATCCGCCGGATCACTATGCCCCA 1352
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||| |||||| | ||| | ||| || |||||| | ||| ||||||||||||
Sbjct 1353 GTTTCCTGCCTGCTCGGGATGTCTCCCTCCCAGTCAAGCGCCCTTATGCCATTGCACT 1410
>seq8765
Length=4561
Score = 87.8 bits (96), Expect = 1e-15
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||| |||||| | |||| ||||| | || | ||||||||| | |||
Sbjct 3889 TACCTTTTATCCATTGAGCAACGGCCTTTCCACGCTGTACCGCGGGATCACTAAGCCCTA 3830
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| | |||||| | ||| ||||||| |||||| | ||| |||| ||| || |
Sbjct 3829 CTTTCGTACCTGCTCGACGTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTGTGCTCT 3770
Query 121 CACTACGATTTCCGACCG 138
|||||||||||||
Sbjct 3769 GCGCGCGATTTCCGACCG 3752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351917754100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |