Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq16320 122 8e-26 seq8765 95.1 1e-17 seq8777 82.4 7e-14 >seq16320 Length=1081 Score = 122 bits (134), Expect = 8e-26 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| ||||||||||| | | ||| ||||||||||||| |||||||||||||||| Sbjct 355 TTGAGCGACGGCCCTTCCATGCGGTACCGCCGGATCACTATGCCCTGCTTTCGCACCTGT 296 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 || ||| |||||||||||||| ||| |||||||||||| | |||| | || Sbjct 295 CCGGCTTGTCTGCCTCGCAGTCAAGCCCCCTTCTGCCATTGCACTCGACGCACGGTTGCC 236 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | || |||||| | ||||||||| Sbjct 235 AACCGTGCTGAGGGGACCTTTGGAAGCCTCCGTTA 201 >seq8765 Length=4561 Score = 95.1 bits (104), Expect = 1e-17 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||| | |||| ||||| | | ||| | ||||||||| | ||| |||||| |||||| Sbjct 3876 TTGAGCAACGGCCTTTCCACGCTGTACCGCGGGATCACTAAGCCCTACTTTCGTACCTGC 3817 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144 |||| ||| |||||||||||||| |||||||| ||| || | | |||| ||| Sbjct 3816 TCGACGTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTGTGCTCTGCGCGCGATTTCC 3757 Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | || ||||| | ||||||||| Sbjct 3756 GACCGCGCTGAGGGAACCTTTGGATGCCTCCGTTA 3722 >seq8777 Length=4537 Score = 82.4 bits (90), Expect = 7e-14 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84 |||||||| || ||||||| | | || ||||||||||||| || |||| ||||| Sbjct 1306 TTGAGCGACGGAGCTTCCATACGCATCCGCCGGATCACTATGCCCCAGTTTCCTGCCTGC 1365 Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129 ||| | ||| | ||| ||||||||| |||||||||||||||| Sbjct 1366 TCGGGATGTCTCCCTCCCAGTCAAGCGCCCTTATGCCATTGCACT 1410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473485653276