Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq16320 122 8e-26
seq8765 95.1 1e-17
seq8777 82.4 7e-14
>seq16320
Length=1081
Score = 122 bits (134), Expect = 8e-26
Identities = 120/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||| ||||||||||| | | ||| ||||||||||||| ||||||||||||||||
Sbjct 355 TTGAGCGACGGCCCTTCCATGCGGTACCGCCGGATCACTATGCCCTGCTTTCGCACCTGT 296
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
|| ||| |||||||||||||| ||| |||||||||||| | |||| | ||
Sbjct 295 CCGGCTTGTCTGCCTCGCAGTCAAGCCCCCTTCTGCCATTGCACTCGACGCACGGTTGCC 236
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | || |||||| | |||||||||
Sbjct 235 AACCGTGCTGAGGGGACCTTTGGAAGCCTCCGTTA 201
>seq8765
Length=4561
Score = 95.1 bits (104), Expect = 1e-17
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||| | |||| ||||| | | ||| | ||||||||| | ||| |||||| ||||||
Sbjct 3876 TTGAGCAACGGCCTTTCCACGCTGTACCGCGGGATCACTAAGCCCTACTTTCGTACCTGC 3817
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTCC 144
|||| ||| |||||||||||||| |||||||| ||| || | | |||| |||
Sbjct 3816 TCGACGTGTCCGTCTCGCAGTCAAGCTCCCTTATGCCTTTGTGCTCTGCGCGCGATTTCC 3757
Query 145 GACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
||||| | | || ||||| | |||||||||
Sbjct 3756 GACCGCGCTGAGGGAACCTTTGGATGCCTCCGTTA 3722
>seq8777
Length=4537
Score = 82.4 bits (90), Expect = 7e-14
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTGC 84
|||||||| || ||||||| | | || ||||||||||||| || |||| |||||
Sbjct 1306 TTGAGCGACGGAGCTTCCATACGCATCCGCCGGATCACTATGCCCCAGTTTCCTGCCTGC 1365
Query 85 TCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACT 129
||| | ||| | ||| ||||||||| ||||||||||||||||
Sbjct 1366 TCGGGATGTCTCCCTCCCAGTCAAGCGCCCTTATGCCATTGCACT 1410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473485653276
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |