Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq16320 289 4e-76 seq8777 286 5e-75 seq8765 275 1e-71 seq20558 150 3e-34 >seq16320 Length=1081 Score = 289 bits (320), Expect = 4e-76 Identities = 230/275 (84%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| ||||||||| |||||| |||||| | ||| ||| |||| || | Sbjct 704 GAGGTGAGTTTCGCACTTAGATGCTTTCAGCGCTTATCTCATCCGAACGCAGCTACCGGG 645 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| || |||| |||||| ||||| | |||||||||||||| Sbjct 644 CAGTGCGGCTGGCGCCACAACCCGTTCACCGGAGGTTCGTCCAACTCGGTCCTCTCGTAC 585 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||||| ||| ||| ||||| |||| | ||||||| || ||||||||||||||||||||| Sbjct 584 TAAGGTCAGGTCCCCTCAAGCTTCCAAACGCCCACAACAGATAGGGACCGAACTGTCTCG 525 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 ||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||| Sbjct 524 CGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 465 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| ||||||||||||||| Sbjct 464 CTTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 430 >seq8777 Length=4537 Score = 286 bits (316), Expect = 5e-75 Identities = 224/268 (84%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67 ||||||| |||||||||| |||||| |||||||| ||| || | | ||| || ||| Sbjct 964 GGCTTCGCGCTTAGATGCTTTCAGCGCTTATCCCGACCAGACGCGGATACCCGGCGGTGC 1023 Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127 || |||| | ||||| ||| ||| ||||| |||| | | |||||||||||||||| | Sbjct 1024 ACCTGGCGGCACAACCGGTAAACCGGAGGTCTGTCAACCACGGTCCTCTCGTACTAGTGG 1083 Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 | | || ||||| |||| ||||||||| ||||| |||||||||||||| ||||||| Sbjct 1084 CCGGCCCACTCAAGACTCCTGCGCCCACGATAGATAGAGACCGAACTGTCTCACGACGTT 1143 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | Sbjct 1144 CTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCC 1203 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||||||| ||||||||||||||| Sbjct 1204 AGCCCCAGGATGTGACGAGCCGACATCG 1231 >seq8765 Length=4561 Score = 275 bits (304), Expect = 1e-71 Identities = 226/274 (82%), Gaps = 1/274 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | | |||| ||||||||| |||||| |||||| | ||| ||| |||| || | Sbjct 4223 GAGGTGAGTTTCGCACTTAGATGCTTTCAGCGCTTATCTCATCCGAACGCAGCTACCGGG 4164 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | ||| |||| ||||| || |||| |||||| ||||| | |||||||||||||| Sbjct 4163 CAGTGCGGCTGGCGCCACAACCCGTTCACCGGAGGTTCGTCCAACTCGGTCCTCTCGTAC 4104 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || | ||| ||||||||| |||| |||||||| |||||||||||| ||||||||| | Sbjct 4103 TAGAGTCAGGTCCTCTCAAGCTTCC-ACGCCCACACCGGATAGGGACCAAACTGTCTCAC 4045 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||| ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||| Sbjct 4044 GACGTTTTGAACCCAGCTCGCGTGCCGCTTTAATTGGCGAACAGCCAAACCCTTGGGACC 3985 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| ||||||||||||||| Sbjct 3984 TTCTCCAGCCCCAGGATGCGACGAGCCGACATCG 3951 >seq20558 Length=687 Score = 150 bits (166), Expect = 3e-34 Identities = 199/268 (74%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 12 TCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAA-CTTAGCTTCCCAGCTATGCACT 70 || ||||||||||| |||||| ||||| |||| | ||||| |||||| |||| || Sbjct 135 TCAGGCTTAGATGCTTTCAGCCTTTATCG--TCCAGTGCGTAGCTGCCCAGCAATGC-CT 191 Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130 | ||| ||||||||| |||||||| || | || |||||||||||| | || Sbjct 192 TATCAG-ACAACTGGTAAACCAGAGGCACCGACAACTCGTTCCTCTCGTACTGGAGCCAC 250 Query 131 CT-CCTCTCAAATTTCCTACGC--CCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187 || || |||| | | | || | ||| | ||||| ||| | ||||||| ||||| | Sbjct 251 CTTCCCCTCAGACTACTAACACATCCATTA--GATAGTAACCAACCTGTCTCACGACGGT 308 Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247 || |||||||||| ||| || |||||||||||||||| ||| ||||||||| || || | Sbjct 309 CTAAACCCAGCTCACGTTCCCCTTTAATGGGCGAACAACCCCACCCTTGGGTGCTGCTGC 368 Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275 | ||||||||| | || ||||||||| Sbjct 369 ACACCCAGGATGGAAAGAACCGACATCG 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780611482428