Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq16320 289 4e-76
seq8777 286 5e-75
seq8765 275 1e-71
seq20558 150 3e-34
>seq16320
Length=1081
Score = 289 bits (320), Expect = 4e-76
Identities = 230/275 (84%), Gaps = 1/275 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | | |||| ||||||||| |||||| |||||| | ||| ||| |||| || |
Sbjct 704 GAGGTGAGTTTCGCACTTAGATGCTTTCAGCGCTTATCTCATCCGAACGCAGCTACCGGG 645
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| ||| |||| ||||| || |||| |||||| ||||| | ||||||||||||||
Sbjct 644 CAGTGCGGCTGGCGCCACAACCCGTTCACCGGAGGTTCGTCCAACTCGGTCCTCTCGTAC 585
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCG 180
||||| ||| ||| ||||| |||| | ||||||| || |||||||||||||||||||||
Sbjct 584 TAAGGTCAGGTCCCCTCAAGCTTCCAAACGCCCACAACAGATAGGGACCGAACTGTCTCG 525
Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||
Sbjct 524 CGACGTTCTGAACCCAGCTCGCGTGCCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 465
Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| || ||||||||||||| |||||||||||||||
Sbjct 464 CTTCTCCAGCCCCAGGATGTGACGAGCCGACATCG 430
>seq8777
Length=4537
Score = 286 bits (316), Expect = 5e-75
Identities = 224/268 (84%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 8 GGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGC 67
||||||| |||||||||| |||||| |||||||| ||| || | | ||| || |||
Sbjct 964 GGCTTCGCGCTTAGATGCTTTCAGCGCTTATCCCGACCAGACGCGGATACCCGGCGGTGC 1023
Query 68 ACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGA 127
|| |||| | ||||| ||| ||| ||||| |||| | | |||||||||||||||| |
Sbjct 1024 ACCTGGCGGCACAACCGGTAAACCGGAGGTCTGTCAACCACGGTCCTCTCGTACTAGTGG 1083
Query 128 CAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187
| | || ||||| |||| ||||||||| ||||| |||||||||||||| |||||||
Sbjct 1084 CCGGCCCACTCAAGACTCCTGCGCCCACGATAGATAGAGACCGAACTGTCTCACGACGTT 1143
Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 1144 CTGAACCCAGCTCGCGTGCCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCTTCTCC 1203
Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275
|||||||||||| |||||||||||||||
Sbjct 1204 AGCCCCAGGATGTGACGAGCCGACATCG 1231
>seq8765
Length=4561
Score = 275 bits (304), Expect = 1e-71
Identities = 226/274 (82%), Gaps = 1/274 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | | |||| ||||||||| |||||| |||||| | ||| ||| |||| || |
Sbjct 4223 GAGGTGAGTTTCGCACTTAGATGCTTTCAGCGCTTATCTCATCCGAACGCAGCTACCGGG 4164
Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121
| ||| |||| ||||| || |||| |||||| ||||| | ||||||||||||||
Sbjct 4163 CAGTGCGGCTGGCGCCACAACCCGTTCACCGGAGGTTCGTCCAACTCGGTCCTCTCGTAC 4104
Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181
|| | ||| ||||||||| |||| |||||||| |||||||||||| ||||||||| |
Sbjct 4103 TAGAGTCAGGTCCTCTCAAGCTTCC-ACGCCCACACCGGATAGGGACCAAACTGTCTCAC 4045
Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241
|||||| ||||||||||||||||||| ||||||| ||||||||||| |||||||||||||
Sbjct 4044 GACGTTTTGAACCCAGCTCGCGTGCCGCTTTAATTGGCGAACAGCCAAACCCTTGGGACC 3985
Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
| || ||||||||||||| |||||||||||||||
Sbjct 3984 TTCTCCAGCCCCAGGATGCGACGAGCCGACATCG 3951
>seq20558
Length=687
Score = 150 bits (166), Expect = 3e-34
Identities = 199/268 (74%), Gaps = 10/268 (4%)
Strand=Plus/Plus
Query 12 TCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAA-CTTAGCTTCCCAGCTATGCACT 70
|| ||||||||||| |||||| ||||| |||| | ||||| |||||| |||| ||
Sbjct 135 TCAGGCTTAGATGCTTTCAGCCTTTATCG--TCCAGTGCGTAGCTGCCCAGCAATGC-CT 191
Query 71 TGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAG 130
| ||| ||||||||| |||||||| || | || |||||||||||| | ||
Sbjct 192 TATCAG-ACAACTGGTAAACCAGAGGCACCGACAACTCGTTCCTCTCGTACTGGAGCCAC 250
Query 131 CT-CCTCTCAAATTTCCTACGC--CCACGACGGATAGGGACCGAACTGTCTCGCGACGTT 187
|| || |||| | | | || | ||| | ||||| ||| | ||||||| ||||| |
Sbjct 251 CTTCCCCTCAGACTACTAACACATCCATTA--GATAGTAACCAACCTGTCTCACGACGGT 308
Query 188 CTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTC 247
|| |||||||||| ||| || |||||||||||||||| ||| ||||||||| || || |
Sbjct 309 CTAAACCCAGCTCACGTTCCCCTTTAATGGGCGAACAACCCCACCCTTGGGTGCTGCTGC 368
Query 248 AGCCCCAGGATGAGACGAGCCGACATCG 275
| ||||||||| | || |||||||||
Sbjct 369 ACACCCAGGATGGAAAGAACCGACATCG 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780611482428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |