Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq19390 289 7e-76 seq8765 147 5e-33 >seq19390 Length=764 Score = 289 bits (320), Expect = 7e-76 Identities = 321/424 (76%), Gaps = 27/424 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| |||||| |||||||| | |||||||| | |||| |||||||| |||||||| Sbjct 435 TTTACAATCCGAAGACCTTCTTCCTTCACGCGGCGTTGCTGGGTCAGGCTTTCGCCCATT 376 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | |||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||| Sbjct 375 GCCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGT 316 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| || |||| ||||| |||| |||| ||| ||||||| ||| Sbjct 315 GGCCGTTCAACCTCTCAGTCCGGCTACTGATCGCAGCCTTGGTGAGCCGTTACCCCACCA 256 Query 185 ACTAGCTAATCCCATCTGGG-------TTCATCCGATAG-----TGAGAGGCCCGAAGGT 232 ||||||||||| || || | |||| | ||| | | | ||||| | | Sbjct 255 ACTAGCTAATCAGATATGAGCCCATCTTTCAGCGGATTGCTCCTTTGGTATCCCGAGGAT 196 Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292 ||| || || ||||||||||||||| |||||||| ||| ||||| Sbjct 195 GCCC--------TCAAAATACATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCC 144 Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAG 350 ||| ||||| ||| | || ||||||||||||||||||||||| || | | || || Sbjct 143 CTCTGAAAGGCAGGTTGCTCATACATTACTCACCCGTCCGCCACTAAGTTA-CAAA--AG 87 Query 351 CAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 410 |||||| || | |||||||||||||||||||||||| |||||||||||||| | Sbjct 86 CAAGCT--CTCGTAACTCCGTTCGACTTGCATGTGTTAGGCACGCCGCCAGCGTTCATCC 29 Query 411 TGAG 414 |||| Sbjct 28 TGAG 25 >seq8765 Length=4561 Score = 147 bits (162), Expect = 5e-33 Identities = 107/123 (87%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||||| ||| || ||||| | ||||||||||||||| |||| || | |||| Sbjct 123 TTTACAACCCATAGGGCCGTCTTCCTTCACGCGGCATGGCTGGGTCAGAATTCCTTCCAT 64 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 4 Query 124 TGG 126 ||| Sbjct 3 TGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222095341248