Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq19390 289 7e-76
seq8765 147 5e-33
>seq19390
Length=764
Score = 289 bits (320), Expect = 7e-76
Identities = 321/424 (76%), Gaps = 27/424 (6%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
||||||| |||||| |||||||| | |||||||| | |||| |||||||| ||||||||
Sbjct 435 TTTACAATCCGAAGACCTTCTTCCTTCACGCGGCGTTGCTGGGTCAGGCTTTCGCCCATT 376
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||| |||
Sbjct 375 GCCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGT 316
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||| | ||| |||||||| || |||| ||||| |||| |||| ||| ||||||| |||
Sbjct 315 GGCCGTTCAACCTCTCAGTCCGGCTACTGATCGCAGCCTTGGTGAGCCGTTACCCCACCA 256
Query 185 ACTAGCTAATCCCATCTGGG-------TTCATCCGATAG-----TGAGAGGCCCGAAGGT 232
||||||||||| || || | |||| | ||| | | | ||||| | |
Sbjct 255 ACTAGCTAATCAGATATGAGCCCATCTTTCAGCGGATTGCTCCTTTGGTATCCCGAGGAT 196
Query 233 CCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCC 292
||| || || ||||||||||||||| |||||||| ||| |||||
Sbjct 195 GCCC--------TCAAAATACATTATGCGGTATTAGCAGTCGTTTCCAACTGTTGTCCCC 144
Query 293 CTCCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACT-CGTCAGCGAAGCAG 350
||| ||||| ||| | || ||||||||||||||||||||||| || | | || ||
Sbjct 143 CTCTGAAAGGCAGGTTGCTCATACATTACTCACCCGTCCGCCACTAAGTTA-CAAA--AG 87
Query 351 CAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 410
|||||| || | |||||||||||||||||||||||| |||||||||||||| |
Sbjct 86 CAAGCT--CTCGTAACTCCGTTCGACTTGCATGTGTTAGGCACGCCGCCAGCGTTCATCC 29
Query 411 TGAG 414
||||
Sbjct 28 TGAG 25
>seq8765
Length=4561
Score = 147 bits (162), Expect = 5e-33
Identities = 107/123 (87%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGG-CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
|||||||||| ||| || ||||| | ||||||||||||||| |||| || | ||||
Sbjct 123 TTTACAACCCATAGGGCCGTCTTCCTTCACGCGGCATGGCTGGGTCAGAATTCCTTCCAT 64
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TGCCCAATATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 4
Query 124 TGG 126
|||
Sbjct 3 TGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222095341248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |