Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq19390 374 3e-101
seq8765 158 4e-36
seq20041 120 9e-25
>seq19390
Length=764
Score = 374 bits (414), Expect = 3e-101
Identities = 368/472 (78%), Gaps = 6/472 (1%)
Strand=Plus/Plus
Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82
|| ||||||||||||||||| | || | |||||||| | | | ||| |||| |
Sbjct 99 AGTGGCGGACGGGTGAGTAATGTATGAGCAACCTGCCTTTCAGAGGGGGACAACAGTTGG 158
Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142
||| | ||||||||| ||||| || ||| | |||| | | || ||||| |
Sbjct 159 AAACGACTGCTAATACCGCATAATGTATTTTGAGGGCATCCTCGGGATACCAAAGGAGCA 218
Query 143 G--CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200
|| | | ||| | | | |||||||||||||||||| |||||||||| ||||||
Sbjct 219 ATCCGCTGAAAGATGGGCTCATATCTGATTAGCTAGTTGGTGGGGTAACGGCTCACCAAG 278
Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260
|| ||||||||||||| |||||||| ||| |||||||||||| ||||||| |||| ||
Sbjct 279 GCTGCGATCAGTAGCCGGACTGAGAGGTTGAACGGCCACATTGGGACTGAGATACGGCCC 338
Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320
| |||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||
Sbjct 339 AGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGC 398
Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCA---AGGAAGAT 377
|||||||||||| || ||||| |||||| | ||||| ||| | | | | ||||
Sbjct 399 AACGCCGCGTGAAGGAAGAAGGTCTTCGGATTGTAAACTTCTTTTATGAGGGACGAAGGA 458
Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437
||||||||| | | || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 459 CGTGACGGTACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 518
Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489
|||| ||| ||||||||||||| ||||| ||| |||||||| ||||||| ||
Sbjct 519 TAGGTGGCAAGCGTTATCCGGATTTACT-GGGTGTAAAGGGCGCGTAGGCGG 569
>seq8765
Length=4561
Score = 158 bits (174), Expect = 4e-36
Identities = 209/287 (73%), Gaps = 25/287 (9%)
Strand=Plus/Plus
Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295
||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1 CCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTAGGGAATATTGG 60
Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGT 354
|||||| || |||| |||| | ||||||||| || || || ||| |||| ||
Sbjct 61 GCAATGGAAGGAATTCTGACCCAGCCATGCCGCGTGAAGGAAGACGGCCCTATGGGTTGT 120
Query 355 AAAGCTCTGT--CCTCA-AGGAAGAT--------AATGACGGTACTTGAG---------- 393
||| ||| | || || || || | || |||| |||||
Sbjct 121 AAACTTCTTTTGCCGCAGAGTAAAGTCCGTCACGTGTGGCGGT--TTGAGAGTATGCGGC 178
Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453
|| ||| ||||||||| |||||||||||||||||||||||| ||| | |||||||
Sbjct 179 GAATAAGTATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATACAAGCGTTA 238
Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||||| ||| | ||| ||||||||||| ||| || |||||||
Sbjct 239 TCCGGATTTA-TTGGGTTTAAAGGGTGCGCAGGCGGACCGTTAAGTC 284
>seq20041
Length=719
Score = 120 bits (132), Expect = 9e-25
Identities = 145/200 (73%), Gaps = 18/200 (9%)
Strand=Plus/Plus
Query 307 AAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCC 366
|| ||||||||||||||||| |||| | || |||| ||||| ||||| | |||||
Sbjct 1 AACCCTGATGCAGCAACGCCACGTGTGGGAAGAAGCATTTCGGTGTGTAAACCACTGTCG 60
Query 367 TCAAGGAA-----------------GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409
| | |||| ||| ||| |||| | ||||||| ||||| |
Sbjct 61 TGAGGGAATAAGGCATCGTTTCGGCGATGTTGAATGTACCTCGAAAGGAAGCACCGGCAA 120
Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469
||| |||||||||||||||||||||||| ||| || |||||| | |||||| ||| |||
Sbjct 121 ACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTGTTCGGAATCACT-GGG 179
Query 470 CGTAAAGGGTGCGTAGGTGG 489
||||||||| ||||||| ||
Sbjct 180 CGTAAAGGGAGCGTAGGCGG 199
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497226753152
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |