Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq19390 374 3e-101 seq8765 158 4e-36 seq20041 120 9e-25 >seq19390 Length=764 Score = 374 bits (414), Expect = 3e-101 Identities = 368/472 (78%), Gaps = 6/472 (1%) Strand=Plus/Plus Query 23 AGCGGCGGACGGGTGAGTAACGCGTGGGTAACCTGCCCTGTACACACGGATAACATACCG 82 || ||||||||||||||||| | || | |||||||| | | | ||| |||| | Sbjct 99 AGTGGCGGACGGGTGAGTAATGTATGAGCAACCTGCCTTTCAGAGGGGGACAACAGTTGG 158 Query 83 AAAGGTATGCTAATACGAGATAATATACTTTTATCGCATGGTAGAAGTATCAAAGCTCCG 142 ||| | ||||||||| ||||| || ||| | |||| | | || ||||| | Sbjct 159 AAACGACTGCTAATACCGCATAATGTATTTTGAGGGCATCCTCGGGATACCAAAGGAGCA 218 Query 143 G--CGGTACAGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAG 200 || | | ||| | | | |||||||||||||||||| |||||||||| |||||| Sbjct 219 ATCCGCTGAAAGATGGGCTCATATCTGATTAGCTAGTTGGTGGGGTAACGGCTCACCAAG 278 Query 201 GCGACGATCAGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCC 260 || ||||||||||||| |||||||| ||| |||||||||||| ||||||| |||| || Sbjct 279 GCTGCGATCAGTAGCCGGACTGAGAGGTTGAACGGCCACATTGGGACTGAGATACGGCCC 338 Query 261 AAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGC 320 | |||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| Sbjct 339 AGACTCCTACGGGAGGCAGCAGTGGGGAATATTGGGCAATGGGCGAAAGCCTGACCCAGC 398 Query 321 AACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCA---AGGAAGAT 377 |||||||||||| || ||||| |||||| | ||||| ||| | | | | |||| Sbjct 399 AACGCCGCGTGAAGGAAGAAGGTCTTCGGATTGTAAACTTCTTTTATGAGGGACGAAGGA 458 Query 378 AATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 ||||||||| | | || ||||| |||||||||||||||||||||||||||||||||| Sbjct 459 CGTGACGGTACCTCATGAATAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 518 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||| ||| ||||||||||||| ||||| ||| |||||||| ||||||| || Sbjct 519 TAGGTGGCAAGCGTTATCCGGATTTACT-GGGTGTAAAGGGCGCGTAGGCGG 569 >seq8765 Length=4561 Score = 158 bits (174), Expect = 4e-36 Identities = 209/287 (73%), Gaps = 25/287 (9%) Strand=Plus/Plus Query 236 CCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGC 295 ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 1 CCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTAGGGAATATTGG 60 Query 296 ACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCTTCGGGTCGT 354 |||||| || |||| |||| | ||||||||| || || || ||| |||| || Sbjct 61 GCAATGGAAGGAATTCTGACCCAGCCATGCCGCGTGAAGGAAGACGGCCCTATGGGTTGT 120 Query 355 AAAGCTCTGT--CCTCA-AGGAAGAT--------AATGACGGTACTTGAG---------- 393 ||| ||| | || || || || | || |||| ||||| Sbjct 121 AAACTTCTTTTGCCGCAGAGTAAAGTCCGTCACGTGTGGCGGT--TTGAGAGTATGCGGC 178 Query 394 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 453 || ||| ||||||||| |||||||||||||||||||||||| ||| | ||||||| Sbjct 179 GAATAAGTATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATACAAGCGTTA 238 Query 454 TCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| ||| | ||| ||||||||||| ||| || ||||||| Sbjct 239 TCCGGATTTA-TTGGGTTTAAAGGGTGCGCAGGCGGACCGTTAAGTC 284 >seq20041 Length=719 Score = 120 bits (132), Expect = 9e-25 Identities = 145/200 (73%), Gaps = 18/200 (9%) Strand=Plus/Plus Query 307 AAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCC 366 || ||||||||||||||||| |||| | || |||| ||||| ||||| | ||||| Sbjct 1 AACCCTGATGCAGCAACGCCACGTGTGGGAAGAAGCATTTCGGTGTGTAAACCACTGTCG 60 Query 367 TCAAGGAA-----------------GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 | | |||| ||| ||| |||| | ||||||| ||||| | Sbjct 61 TGAGGGAATAAGGCATCGTTTCGGCGATGTTGAATGTACCTCGAAAGGAAGCACCGGCAA 120 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 ||| |||||||||||||||||||||||| ||| || |||||| | |||||| ||| ||| Sbjct 121 ACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTGTTCGGAATCACT-GGG 179 Query 470 CGTAAAGGGTGCGTAGGTGG 489 ||||||||| ||||||| || Sbjct 180 CGTAAAGGGAGCGTAGGCGG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497226753152