Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq19390 361 1e-97
seq20041 298 1e-78
seq8765 277 4e-72
seq13431 185 2e-44
>seq19390
Length=764
Score = 361 bits (400), Expect = 1e-97
Identities = 253/287 (88%), Gaps = 1/287 (0%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 479 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCG 538
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|| |||||||| |||||||| ||||||| || | |||||||| |||||| | ||
Sbjct 539 GATTTACTGGGTGTAAAGGGCGCGTAGGCGGGATGC-AAGTCAGATGTGAAATCCCTGGG 597
Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192
|||||| |||| ||||| |||||||||| || |||||| |||| || ||| |||||
Sbjct 598 CTCAACTCCGGAACTGCATTTGAAACTGTTTTTCTTGAGTGCTGGAGAGGTAAGCGGAAT 657
Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 717
Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299
|||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 718 ACTGGACTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA 764
>seq20041
Length=719
Score = 298 bits (330), Expect = 1e-78
Identities = 313/405 (77%), Gaps = 16/405 (4%)
Strand=Plus/Plus
Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69
||||||| ||||| |||| |||||||||||||||||||||||| ||| || |||||| |
Sbjct 106 AGGAAGCACCGGCAAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTGT 165
Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGA-GGTGAAAGGCT 128
|||||| ||||||||||||||| ||||||| || | ||| | || || || |
Sbjct 166 TCGGAATCACTGGGCGTAAAGGGAGCGTAGGCGGAGATTCAAG-CGGATTGTACAATCCC 224
Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCT---AGAGTGCAGGAGGGGCAA 185
||| ||||||||| |||| | ||||| | || | ||| | |||||||
Sbjct 225 GGGGCCCAACCCCGGACCTGCAGTCCGAACTGGATTTCTTGGATAGTTC---AGGGGCAG 281
Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245
| ||||||||| ||||||||||| |||||||||| || |||| ||||||| ||||||||
Sbjct 282 GCGGAATTCCTGGTGTAGCGGTGGAATGCGTAGAGATCAGGAAGAACACCGATGGCGAAG 341
Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305
|| || |||||| | | ||| |||||||||||||| | ||| ||||||||||||||
Sbjct 342 GCAGCCTGCTGGGGACTCATCGACGCTGAGGCTCGAAAGTGCGGGTAGCAAACAGGATTA 401
Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT-CGGGGCGCATAAGTGC 364
|||||||||||||||| | |||||||||||| ||||| ||||| ||||| | ||
Sbjct 402 GATACCCTGGTAGTCCGCACCGTAAACGATGCATACTGGGTGTCCGGGGTTC------GC 455
Query 365 TCC-GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
|| ||| ||| ||| ||||| ||||||| || |||||||||||
Sbjct 456 CCCGGGTACCGAAGCCAACGCGTTAAGTATGCCGCCTGGGGAGTA 500
>seq8765
Length=4561
Score = 277 bits (306), Expect = 4e-72
Identities = 298/393 (76%), Gaps = 10/393 (3%)
Strand=Plus/Plus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| |||
Sbjct 189 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATACAAGCGTTATCCGGATTTA 248
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
|||| ||||||||||| ||| || ||||||||| ||||||| | | ||||||||
Sbjct 249 TTGGGTTTAAAGGGTGCGCAGGCGGACCGTTAAGTCAGGGGTGAAAAGTTGGGGCTCAAC 308
Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGC---AGGAGGGGCAAGTGGAATTCC 195
|| ||| |||| |||| || ||||||||| ||| | ||| |||||
Sbjct 309 TCCAATCGTGCCCTTGATACTGGCGGACTAGAGTGCGATAGGCGTGGC---CGGAATGTG 365
Query 196 TAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCT 255
||||||||||||||||| ||||||| ||||||| | | |||| | | | |
Sbjct 366 ATGTGTAGCGGTGAAATGCTTAGATATGTCACAGAACACCGATCGAGAAGTCAGGTCACG 425
Query 256 GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 315
| | ||||||| || | || |||||||||||||| ||||||||||||||||||||||
Sbjct 426 AGTTCGCAACTGACGCTCATGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGG 485
Query 316 TAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGC 375
|||||||||||||||||||||| ||| | |||||||| || | | ||||| |
Sbjct 486 TAGTCCACGCCGTAAACGATGATCACTCGTTGTCGGGGGGC----GACCCTCGGTGGCCA 541
Query 376 AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
||| || || |||||| |||||||||||||||
Sbjct 542 AGCGAAAGCGATAAGTGATCCACCTGGGGAGTA 574
>seq13431
Length=1516
Score = 185 bits (204), Expect = 2e-44
Identities = 274/384 (71%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89
|||||||| |||||||||| || | |||| | || | | ||| ||||| ||||
Sbjct 458 GTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCTGTTTTTATTGGGCCTAAA 517
Query 90 GGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACT-G 148
| || ||||| ||||| ||||||| ||||||| || | ||| ||| |||| | |
Sbjct 518 GCGTTCGTAGCCGGTTTGATAAGTCACTGGTGAAATCCTGTAGCTTAACTGTGGGAATTG 577
Query 149 CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTG 208
|| ||| |||| | || ||| | |||| || || || | ||| || |||| ||||
Sbjct 578 CTGGTGATACTGTTGAACTTGAGGTCGGGAGAGGTTAGCGGTACTCCCAGGGTAGAGGTG 637
Query 209 AAATGC-GTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTG 267
|||| | ||| || | |||||| |||| ||||||||||||||| ||||| | | |||
Sbjct 638 AAATTCTGTA-ATCCTGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGAACCTG 696
Query 268 ACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCG 327
|| ||||| ||||||| |||| || ||| ||||||||||||| |||||||| ||||
Sbjct 697 ACGGTGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCCG 756
Query 328 TAAACGATGAATACTAGGTGTCGG---GGCGCATAAGTGCTCCGGTGCCGCAGCAAACGC 384
||||||||| ||| ||||| || ||| | |||||||||||| || ||
Sbjct 757 TAAACGATGCGGACTTGGTGTTGGGATGGCTTTGAGCCGCTCCGGTGCCGAAGGGAAGCT 816
Query 385 AATAAGTATTCCACCTGGGGAGTA 408
||||| || |||||| ||||
Sbjct 817 GTTAAGTCCGCCGCCTGGGAAGTA 840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202900126464
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