Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq19390 361 1e-97 seq20041 298 1e-78 seq8765 277 4e-72 seq13431 185 2e-44 >seq19390 Length=764 Score = 361 bits (400), Expect = 1e-97 Identities = 253/287 (88%), Gaps = 1/287 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 479 AAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTATCCG 538 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || |||||||| |||||||| ||||||| || | |||||||| |||||| | || Sbjct 539 GATTTACTGGGTGTAAAGGGCGCGTAGGCGGGATGC-AAGTCAGATGTGAAATCCCTGGG 597 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 |||||| |||| ||||| |||||||||| || |||||| |||| || ||| ||||| Sbjct 598 CTCAACTCCGGAACTGCATTTGAAACTGTTTTTCTTGAGTGCTGGAGAGGTAAGCGGAAT 657 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 658 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 717 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||||||||||||| ||||||| ||||||||||||||||||||| Sbjct 718 ACTGGACTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACA 764 >seq20041 Length=719 Score = 298 bits (330), Expect = 1e-78 Identities = 313/405 (77%), Gaps = 16/405 (4%) Strand=Plus/Plus Query 10 AGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTAT 69 ||||||| ||||| |||| |||||||||||||||||||||||| ||| || |||||| | Sbjct 106 AGGAAGCACCGGCAAACTTCGTGCCAGCAGCCGCGGTAATACGAGGGGTGCAAGCGTTGT 165 Query 70 CCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGA-GGTGAAAGGCT 128 |||||| ||||||||||||||| ||||||| || | ||| | || || || | Sbjct 166 TCGGAATCACTGGGCGTAAAGGGAGCGTAGGCGGAGATTCAAG-CGGATTGTACAATCCC 224 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCT---AGAGTGCAGGAGGGGCAA 185 ||| ||||||||| |||| | ||||| | || | ||| | ||||||| Sbjct 225 GGGGCCCAACCCCGGACCTGCAGTCCGAACTGGATTTCTTGGATAGTTC---AGGGGCAG 281 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 | ||||||||| ||||||||||| |||||||||| || |||| ||||||| |||||||| Sbjct 282 GCGGAATTCCTGGTGTAGCGGTGGAATGCGTAGAGATCAGGAAGAACACCGATGGCGAAG 341 Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 || || |||||| | | ||| |||||||||||||| | ||| |||||||||||||| Sbjct 342 GCAGCCTGCTGGGGACTCATCGACGCTGAGGCTCGAAAGTGCGGGTAGCAAACAGGATTA 401 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGT-CGGGGCGCATAAGTGC 364 |||||||||||||||| | |||||||||||| ||||| ||||| ||||| | || Sbjct 402 GATACCCTGGTAGTCCGCACCGTAAACGATGCATACTGGGTGTCCGGGGTTC------GC 455 Query 365 TCC-GGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| ||| ||| ||||| ||||||| || ||||||||||| Sbjct 456 CCCGGGTACCGAAGCCAACGCGTTAAGTATGCCGCCTGGGGAGTA 500 >seq8765 Length=4561 Score = 277 bits (306), Expect = 4e-72 Identities = 298/393 (76%), Gaps = 10/393 (3%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||||||||||||||||||||| ||| | ||||||||||||| ||| Sbjct 189 CGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATACAAGCGTTATCCGGATTTA 248 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||||||||||| ||| || ||||||||| ||||||| | | |||||||| Sbjct 249 TTGGGTTTAAAGGGTGCGCAGGCGGACCGTTAAGTCAGGGGTGAAAAGTTGGGGCTCAAC 308 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGC---AGGAGGGGCAAGTGGAATTCC 195 || ||| |||| |||| || ||||||||| ||| | ||| ||||| Sbjct 309 TCCAATCGTGCCCTTGATACTGGCGGACTAGAGTGCGATAGGCGTGGC---CGGAATGTG 365 Query 196 TAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCT 255 ||||||||||||||||| ||||||| ||||||| | | |||| | | | | Sbjct 366 ATGTGTAGCGGTGAAATGCTTAGATATGTCACAGAACACCGATCGAGAAGTCAGGTCACG 425 Query 256 GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGG 315 | | ||||||| || | || |||||||||||||| |||||||||||||||||||||| Sbjct 426 AGTTCGCAACTGACGCTCATGCACGAAAGCGTGGGGATCAAACAGGATTAGATACCCTGG 485 Query 316 TAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCGC 375 |||||||||||||||||||||| ||| | |||||||| || | | ||||| | Sbjct 486 TAGTCCACGCCGTAAACGATGATCACTCGTTGTCGGGGGGC----GACCCTCGGTGGCCA 541 Query 376 AGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| || || |||||| ||||||||||||||| Sbjct 542 AGCGAAAGCGATAAGTGATCCACCTGGGGAGTA 574 >seq13431 Length=1516 Score = 185 bits (204), Expect = 2e-44 Identities = 274/384 (71%), Gaps = 6/384 (2%) Strand=Plus/Plus Query 30 GTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAA 89 |||||||| |||||||||| || | |||| | || | | ||| ||||| |||| Sbjct 458 GTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCTGTTTTTATTGGGCCTAAA 517 Query 90 GGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACT-G 148 | || ||||| ||||| ||||||| ||||||| || | ||| ||| |||| | | Sbjct 518 GCGTTCGTAGCCGGTTTGATAAGTCACTGGTGAAATCCTGTAGCTTAACTGTGGGAATTG 577 Query 149 CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTG 208 || ||| |||| | || ||| | |||| || || || | ||| || |||| |||| Sbjct 578 CTGGTGATACTGTTGAACTTGAGGTCGGGAGAGGTTAGCGGTACTCCCAGGGTAGAGGTG 637 Query 209 AAATGC-GTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTG 267 |||| | ||| || | |||||| |||| ||||||||||||||| ||||| | | ||| Sbjct 638 AAATTCTGTA-ATCCTGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGAACCTG 696 Query 268 ACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCG 327 || ||||| ||||||| |||| || ||| ||||||||||||| |||||||| |||| Sbjct 697 ACGGTGAGGGACGAAAGCTAGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTAGCCG 756 Query 328 TAAACGATGAATACTAGGTGTCGG---GGCGCATAAGTGCTCCGGTGCCGCAGCAAACGC 384 ||||||||| ||| ||||| || ||| | |||||||||||| || || Sbjct 757 TAAACGATGCGGACTTGGTGTTGGGATGGCTTTGAGCCGCTCCGGTGCCGAAGGGAAGCT 816 Query 385 AATAAGTATTCCACCTGGGGAGTA 408 ||||| || |||||| |||| Sbjct 817 GTTAAGTCCGCCGCCTGGGAAGTA 840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202900126464